RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 LONRF2Q1L5Z9 754 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 RAB6CQ53S08 254 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 GPR65Q8IYL9 337 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 RCOR2Q8IZ40 523 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 MMGT1Q8N4V1 131 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 TTC9BQ8N6N2 239 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 SCAMP5Q8TAC9 235 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 FAM172AQ8WUF8 416 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 DPF3Q92784 378 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 NT5C3BQ969T7 300 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 CLSTN3Q9BQT9 956 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 ADAM33Q9BZ11 813 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 RAB6CQ9H0N0 254 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 STK39Q9UEW8 545 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 USP18Q9UMW8 372 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 COL4A4P53420 1690 aaPredicted RBP19.27■□□□□ 0.68
CLN3-254ENST00000637050 WDR27A2RRH5 827 aa19.27■□□□□ 0.67
CLN3-254ENST00000637050 LTFP02788 710 aa19.27■□□□□ 0.67
CLN3-254ENST00000637050 HAPLN1P10915 354 aaPredicted RBP19.27■□□□□ 0.67
CLN3-254ENST00000637050 RPL17P18621 184 aaKnown RBP19.27■□□□□ 0.67
CLN3-254ENST00000637050 TFE3P19532 575 aaPredicted RBP19.27■□□□□ 0.67
CLN3-254ENST00000637050 CDO1Q16878 200 aa19.27■□□□□ 0.67
CLN3-254ENST00000637050 SLC25A52Q3SY17 297 aa19.27■□□□□ 0.67
CLN3-254ENST00000637050 CYP4V2Q6ZWL3 525 aaPredicted RBP19.27■□□□□ 0.67
CLN3-254ENST00000637050 SLC13A5Q86YT5 568 aaPredicted RBP19.27■□□□□ 0.67
CLN3-254ENST00000637050 ABHD8Q96I13 439 aa19.27■□□□□ 0.67
CLN3-254ENST00000637050 CRISPLD1Q9H336 500 aa19.27■□□□□ 0.67
CLN3-254ENST00000637050 NGRNQ9NPE2 291 aaKnown RBP19.27■□□□□ 0.67
CLN3-254ENST00000637050 C2CD2LO14523 706 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 FGF18O76093 207 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 OR1D2P34982 312 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 GPR15P49685 360 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 HDAC4P56524 1084 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 KRT17Q04695 432 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 DDR2Q16832 855 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 DCAF6Q58WW2 860 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 STRADAQ7RTN6 431 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 BNIPLQ7Z465 357 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 VPS52Q8N1B4 723 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 TSC1Q92574 1164 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 RBM41Q96IZ5 413 aaKnown RBP19.26■□□□□ 0.67
CLN3-254ENST00000637050 PEBP4Q96S96 227 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 NPY6RQ99463 290 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 ZWILCHQ9H900 591 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 PCSK1NQ9UHG2 260 aa19.26■□□□□ 0.67
CLN3-254ENST00000637050 CCDC188H7C350 402 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 KRIT1O00522 736 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 FSCN2O14926 492 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 TLL1O43897 1013 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 ENDOD1O94919 500 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 KRT1P04264 644 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 URODP06132 367 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 COPS2P61201 443 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 SYPL2Q5VXT5 272 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 BEND5Q7L4P6 421 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 NUP93Q8N1F7 819 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 CMASQ8NFW8 434 aaPredicted RBP19.25■□□□□ 0.67
CLN3-254ENST00000637050 SPATA17Q96L03 361 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 SLITRK1Q96PX8 696 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 TBCBQ99426 244 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 AP1M1Q9BXS5 423 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 IL37Q9NZH6 218 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 STAP1Q9ULZ2 295 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 NAALADL1Q9UQQ1 740 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 SLC27A5Q9Y2P5 690 aa19.25■□□□□ 0.67
CLN3-254ENST00000637050 PRPSAP2O60256 369 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 ABLIM3O94929 683 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 RARAP10276 462 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 DUSP4Q13115 394 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 ELF2Q15723 593 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 SMTNL2Q2TAL5 461 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 SDHAF4Q5VUM1 108 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 OTUD1Q5VV17 481 aaPredicted RBP19.24■□□□□ 0.67
CLN3-254ENST00000637050 CCDC50Q8IVM0 306 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 RAPGEF5Q92565 580 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 TRIM62Q9BVG3 475 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 KLHL11Q9NVR0 708 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 AFF4Q9UHB7 1163 aaKnown RBP19.24■□□□□ 0.67
CLN3-254ENST00000637050 NR2E1Q9Y466 385 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 LCHNA4D1U4 455 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 C3orf70A6NLC5 250 aaPredicted RBP19.24■□□□□ 0.67
CLN3-254ENST00000637050 PTPN7P35236 360 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 SULT1E1P49888 294 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 RPL10AP62906 217 aaKnown RBP19.24■□□□□ 0.67
CLN3-254ENST00000637050 SMC1AQ14683 1233 aaKnown RBP19.24■□□□□ 0.67
CLN3-254ENST00000637050 MGAT5BQ3V5L5 792 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 BOLA3Q53S33 107 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 KCNT1Q5JUK3 1230 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 ZFYVE27Q5T4F4 411 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 BSPRYQ5W0U4 402 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 TPGS2Q68CL5 300 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 ANKS1BQ7Z6G8 1248 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 ZDHHC14Q8IZN3 488 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 KLHL23Q8NBE8 558 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 ZNF461Q8TAF7 563 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 TEKT4Q8WW24 435 aa19.24■□□□□ 0.67
CLN3-254ENST00000637050 RNF25Q96BH1 459 aaPredicted RBP19.24■□□□□ 0.67
CLN3-254ENST00000637050 ACSF2Q96CM8 615 aaPredicted RBP19.24■□□□□ 0.67
CLN3-254ENST00000637050 SEPT5Q99719 369 aaPredicted RBP19.24■□□□□ 0.67
CLN3-254ENST00000637050 ZBP1Q9H171 429 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms