RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TGDSO95455 350 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 KRT4P19013 534 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 ATP6V1C1P21283 382 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 EIF4BP23588 611 aaKnown RBP4.15□□□□□ -1.75
SCN1A-214ENST00000637038 KLRC2P26717 231 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 ATP5OP48047 213 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 KLF1Q13351 362 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-214ENST00000637038 BLMHQ13867 455 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 KCTD2Q14681 263 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 KYAT1Q16773 422 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF699Q32M78 642 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 MFSD4BQ5TF39 518 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 TTC39BQ5VTQ0 682 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-214ENST00000637038 ASRGL1Q7L266 308 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 CTAGE3PQ8IX95 158 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 PPP4R1Q8TF05 950 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 RSPH1Q8WYR4 309 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 MAML1Q92585 1016 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 CDKL2Q92772 493 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 APOPT1Q96IL0 206 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 PAFAH2Q99487 392 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM134Q9H6X4 195 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 SLC38A10Q9HBR0 1119 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 STK39Q9UEW8 545 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 HAO1Q9UJM8 370 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 LRCH1Q9Y2L9 728 aa4.15□□□□□ -1.75
SCN1A-214ENST00000637038 hCG_1818297A0A087WSY0 165 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM191CA6NGB0 347 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 DHX15O43143 795 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 SNRPAP09012 282 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 KRT3P12035 628 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 TAL1P17542 331 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 IVDP26440 423 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 EIF3EP60228 445 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 AP2B1P63010 937 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 SP4Q02446 784 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 BFSP2Q13515 415 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 KPNB1Q14974 876 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 STILQ15468 1287 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 STXBP2Q15833 593 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 DBN1Q16643 649 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 ACCSLQ4AC99 568 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 TAF1BQ53T94 588 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 PPP2R2DQ66LE6 453 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 MFSD7Q6UXD7 560 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 ZPBP2Q6X784 338 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 C3orf62Q6ZUJ4 267 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 CDKL3Q8IVW4 592 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 NIPA2Q8N8Q9 360 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 FBXO22Q8NEZ5 403 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 PLEKHO2Q8TD55 490 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 RMDN2Q96LZ7 410 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 BTBD10Q9BSF8 475 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 CCDC28BQ9BUN5 200 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 UNC93B1Q9H1C4 597 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 ACAD9Q9H845 621 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 FBXO28Q9NVF7 368 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 PDP2Q9P2J9 529 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 ARHGAP28Q9P2N2 729 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 DPP7Q9UHL4 492 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 DNPEPQ9ULA0 475 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 R3HDM2Q9Y2K5 976 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 CLUHO75153 1309 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 GOLGA8SH3BPF8 625 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 TRAFD1O14545 582 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 PRPSAP2O60256 369 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 LRP3O75074 770 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 IL18RAPO95256 599 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 PIGRP01833 764 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 OATP04181 439 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 ZFXP17010 805 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 MMP8P22894 467 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 DNAJB2P25686 324 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 CNTFP26441 200 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 ADSSP30520 456 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 GARSP41250 739 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 TAS2R40P59535 323 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 PSMC1P62191 440 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 CDK16Q00536 496 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 PTK7Q13308 1070 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 DYNC1I2Q13409 638 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 HNRNPDQ14103 355 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 KRT72Q14CN4 511 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF667Q5HYK9 610 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 RNASEH2BQ5TBB1 312 aaKnown RBP4.14□□□□□ -1.75
SCN1A-214ENST00000637038 SLC30A10Q6XR72 485 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 BBS12Q6ZW61 710 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 CHSY1Q86X52 802 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 ANKMY2Q8IV38 441 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 BRSK2Q8IWQ3 736 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 RAB3IL1Q8TBN0 382 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 PIP4K2CQ8TBX8 421 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 FNIP1Q8TF40 1166 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 FAF2Q96CS3 445 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 FAXDC2Q96IV6 333 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 TSNARE1Q96NA8 513 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 KIFC3Q9BVG8 833 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 TBC1D10AQ9BXI6 508 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 ZWILCHQ9H900 591 aa4.14□□□□□ -1.75
SCN1A-214ENST00000637038 VCX3AQ9NNX9 186 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms