RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 RAD51CO43502 376 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 TBC1D4O60343 1298 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 HEXIM1O94992 359 aaKnown RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 TRUB2O95900 331 aaKnown RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 GAS8O95995 478 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 LTFP02788 710 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 RALAP11233 206 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 LCP1P13796 627 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 IGFBP6P24592 240 aaPredicted RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 RDXP35241 583 aaKnown RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 CLCN6P51797 869 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 EPHB4P54760 987 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 DRG2P55039 364 aaKnown RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 VSNL1P62760 191 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 DR1Q01658 176 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 GPR17Q13304 367 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 TFDP2Q14188 446 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 DPYSL2Q16555 572 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 CCNG2Q16589 344 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 USP41Q3LFD5 358 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 CTXN3Q4LDR2 81 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 SLC8B1Q6J4K2 584 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 EMBQ6PCB8 327 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 BBS12Q6ZW61 710 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 CYP4V2Q6ZWL3 525 aaPredicted RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 CPNE8Q86YQ8 564 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 ARHGAP18Q8N392 663 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 ARFGAP1Q8N6T3 406 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 CCHCR1Q8TD31 782 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 FAM172AQ8WUF8 416 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 NTAN1Q96AB6 310 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 FAM149B1Q96BN6 582 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 TRIM43Q96BQ3 446 aaPredicted RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 PKNOX2Q96KN3 472 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 CFAP57Q96MR6 1250 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 NPY6RQ99463 290 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 LPIN3Q9BQK8 851 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 LRRC1Q9BTT6 524 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 HERC2P3Q9BVR0 1158 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 AP1M1Q9BXS5 423 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 ULBP1Q9BZM6 244 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 DDX47Q9H0S4 455 aaKnown RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 FBXO44Q9H4M3 255 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 CWH43Q9H720 699 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 NGRNQ9NPE2 291 aaKnown RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 PRDM5Q9NQX1 630 aaPredicted RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 GDF3Q9NR23 364 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 MTRRQ9UBK8 725 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 MAFFQ9ULX9 164 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 UTP11Q9Y3A2 253 aaKnown RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 FAM92AA1XBS5 289 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 DLL1O00548 723 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 TNRC18O15417 2968 aaPredicted RBP11.04□□□□□ -0.64
CLN3-248ENST00000636355 BEST1O76090 585 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 RTN3O95197 1032 aaPredicted RBP11.04□□□□□ -0.64
CLN3-248ENST00000636355 ECEL1O95672 775 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 F9P00740 461 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 CSF2RAP15509 400 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 BDNFP23560 247 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 IL1R2P27930 398 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 PSEN1P49768 467 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 GATMP50440 423 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 HDAC4P56524 1084 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 SCAPQ12770 1279 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 CCDC142Q17RM4 750 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 SLC39A12Q504Y0 691 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 ZFYVE27Q5T4F4 411 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLN3-248ENST00000636355 MAGOHBQ96A72 148 aaKnown RBP11.04□□□□□ -0.64
CLN3-248ENST00000636355 FAF2Q96CS3 445 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 IGSF21Q96ID5 467 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 SPATA17Q96L03 361 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 GPR62Q9BZJ7 368 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 AAASQ9NRG9 546 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 FAM114A2Q9NRY5 505 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 TMEM30AQ9NV96 361 aa11.04□□□□□ -0.64
CLN3-248ENST00000636355 APOC4-APOC2K7ER74 178 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 TNFRSF10BO14763 440 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 APOC2P02655 101 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 SOD2P04179 222 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 RARAP10276 462 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 CPB1P15086 417 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 TCF4P15884 667 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 ZFXP17010 805 aaPredicted RBP11.03□□□□□ -0.64
CLN3-248ENST00000636355 TGM2P21980 687 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 KDELR1P24390 212 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 HTR7P34969 479 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 GJC1P36383 396 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 COILP38432 576 aaPredicted RBP11.03□□□□□ -0.64
CLN3-248ENST00000636355 ARSEP51690 589 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 SLC5A3P53794 718 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 RNASE9P60153 205 aaKnown RBP11.03□□□□□ -0.64
CLN3-248ENST00000636355 RPL10AP62906 217 aaKnown RBP11.03□□□□□ -0.64
CLN3-248ENST00000636355 HTRA4P83105 476 aaPredicted RBP11.03□□□□□ -0.64
CLN3-248ENST00000636355 FPGSQ05932 587 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 MTA1Q13330 715 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 TPGS2Q68CL5 300 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 CCDC137Q6PK04 289 aaKnown RBP11.03□□□□□ -0.64
CLN3-248ENST00000636355 KCNT2Q6UVM3 1135 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 MFSD7Q6UXD7 560 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms