RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 KIAA1958Q8N8K9 716 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 OLIG1Q8TAK6 271 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 GOLGA5Q8TBA6 731 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 HMGB4Q8WW32 186 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 OVCA2Q8WZ82 227 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 PIGKQ92643 395 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 JAKMIP2Q96AA8 810 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 ERLEC1Q96DZ1 483 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 SMARCD1Q96GM5 515 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 IL37Q9NZH6 218 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 RCOR1Q9UKL0 485 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 ANGPTL2Q9UKU9 493 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 GREB1Q4ZG55 1949 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 RALGAPA1Q6GYQ0 2036 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 A0A0A0MRY4 1105 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 A0A1B0GVL5 298 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 TBC1D3BA6NDS4 549 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 KHNYNO15037 678 aaKnown RBP17.1■□□□□ 0.33
CLN3-246ENST00000636228 MAP3K13O43283 966 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 ALDH1A2O94788 518 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 NR3C1P04150 777 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 ZDHHC11BP0C7U3 371 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 ADORA2BP29275 332 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 EIF2DP41214 584 aaKnown RBP17.1■□□□□ 0.33
CLN3-246ENST00000636228 WASP42768 502 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 TNFRSF4P43489 277 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 AP3M2P53677 418 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 IRX4P78413 519 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 SGSM1Q2NKQ1 1148 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 ANO4Q32M45 955 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 SNX30Q5VWJ9 437 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 CEP135Q66GS9 1140 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 SV2AQ7L0J3 742 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 HSCBQ8IWL3 235 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 NACA2Q9H009 215 aa17.1■□□□□ 0.33
CLN3-246ENST00000636228 BCCIPQ9P287 314 aaKnown RBP eCLIP17.1■□□□□ 0.33
CLN3-246ENST00000636228 MBD1Q9UIS9 605 aaPredicted RBP17.1■□□□□ 0.33
CLN3-246ENST00000636228 EML5Q05BV3 1969 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 TCRBV21S2A2A0A5A6 115 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.09■□□□□ 0.33
CLN3-246ENST00000636228 TULP3O75386 442 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 P2RY2P41231 377 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 PTGER3P43115 390 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 NOVA1P51513 510 aaKnown RBP17.09■□□□□ 0.33
CLN3-246ENST00000636228 ZACNQ401N2 412 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 EOGTQ5NDL2 527 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 C1orf220Q5T0J3 134 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 BTBD8Q5XKL5 378 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 GPRIN1Q7Z2K8 1008 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 C11orf74Q86VG3 221 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 SLC9A9Q8IVB4 645 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 ETFBKMTQ8IXQ9 262 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 CRYBG2Q8N1P7 616 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 DEFB119Q8N690 84 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 TWNKQ96RR1 684 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 POLMQ9NP87 494 aaPredicted RBP17.09■□□□□ 0.33
CLN3-246ENST00000636228 SPHK2Q9NRA0 654 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 TMEM74BQ9NUR3 256 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 OSER1Q9NX31 292 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 NUDT5Q9UKK9 219 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 CFAP45Q9UL16 551 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 HCN2Q9UL51 889 aa17.09■□□□□ 0.33
CLN3-246ENST00000636228 FAM92AA1XBS5 289 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 PDXKO00764 312 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 CDX4O14627 284 aaPredicted RBP17.08■□□□□ 0.32
CLN3-246ENST00000636228 GREM1O60565 184 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 TLR5O60602 858 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 HLA-DRAP01903 254 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 PDIA4P13667 645 aaKnown RBP17.08■□□□□ 0.32
CLN3-246ENST00000636228 P4HA1P13674 534 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 PFKFB1P16118 471 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 ASPAP45381 313 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 UAP1L1Q3KQV9 507 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 C10orf76Q5T2E6 689 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 LPCAT2Q7L5N7 544 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 MIB1Q86YT6 1006 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 ZNF513Q8N8E2 541 aaPredicted RBP17.08■□□□□ 0.32
CLN3-246ENST00000636228 WHAMMQ8TF30 809 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 OTUB2Q96DC9 234 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 COMMD8Q9NX08 183 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 DEC1Q9P2X7 70 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 MAPK8IP1Q9UQF2 711 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 GTF3C3Q9Y5Q9 886 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 EPG5Q9HCE0 2579 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 TPRP12270 2363 aaKnown RBP17.08■□□□□ 0.32
CLN3-246ENST00000636228 PTPRDP23468 1912 aa17.08■□□□□ 0.32
CLN3-246ENST00000636228 ACACBO00763 2458 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 ATXN2Q99700 1313 aaKnown RBP17.07■□□□□ 0.32
CLN3-246ENST00000636228 MDM4O15151 490 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 CYP26A1O43174 497 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 HOXC11O43248 304 aaPredicted RBP17.07■□□□□ 0.32
CLN3-246ENST00000636228 ASS1P00966 412 aaKnown RBP17.07■□□□□ 0.32
CLN3-246ENST00000636228 RPN1P04843 607 aaKnown RBP17.07■□□□□ 0.32
CLN3-246ENST00000636228 PRR29P0C7W0 189 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 TRIM49P0CI25 452 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 TRIM49CP0CI26 452 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 PIK3CAP42336 1068 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 TUBP50607 506 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 MAP7D1Q3KQU3 841 aa17.07■□□□□ 0.32
CLN3-246ENST00000636228 SH3PXD2AQ5TCZ1 1133 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms