RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ZNF473Q8WTR7 871 aaKnown RBP22.21■■□□□ 1.15
LIME1-210ENST00000621325 CPT1BQ92523 772 aa22.21■■□□□ 1.15
LIME1-210ENST00000621325 RNF157Q96PX1 679 aa22.21■■□□□ 1.15
LIME1-210ENST00000621325 FRMD8P1Q9BZ68 369 aaPredicted RBP22.21■■□□□ 1.15
LIME1-210ENST00000621325 MIOSQ9NXC5 875 aa22.21■■□□□ 1.15
LIME1-210ENST00000621325 FARP1Q9Y4F1 1045 aaPredicted RBP22.21■■□□□ 1.15
LIME1-210ENST00000621325 MCF2LO15068 1137 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 KPNA6O60684 536 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 LRPAP1P30533 357 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 MNAT1P51948 309 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 PRKCZQ05513 592 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 TADA2BQ86TJ2 420 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 FUKQ8N0W3 1084 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 TSPAN18Q96SJ8 248 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 FOXP3Q9BZS1 431 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 SENP6Q9GZR1 1112 aaPredicted RBP22.2■■□□□ 1.14
LIME1-210ENST00000621325 AGO3Q9H9G7 860 aaKnown RBP22.2■■□□□ 1.14
LIME1-210ENST00000621325 PCDH18Q9HCL0 1135 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 BEST1O76090 585 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 MAP3K6O95382 1288 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 TM4SF4P48230 202 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 MTM1Q13496 603 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 BOLA3Q53S33 107 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 CAPN12Q6ZSI9 719 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 SLC26A9Q7LBE3 791 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 ZDHHC17Q8IUH5 632 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 PQLC3Q8N755 202 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 TBK1Q9UHD2 729 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 SHOC2Q9UQ13 582 aa22.2■■□□□ 1.14
LIME1-210ENST00000621325 TCRBV7S3A2A0A539 114 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 GMNCA6NCL1 334 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 WARSP23381 471 aaKnown RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 RPL34P49207 117 aaKnown RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 NOMO1Q15155 1222 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 KIAA0319Q5VV43 1072 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 SERINC5Q86VE9 423 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 TOP6BLQ8N6T0 577 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 LRRN4Q8WUT4 740 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 P3H4Q92791 437 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 TSPYL2Q9H2G4 693 aaPredicted RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 SH3BP1Q9Y3L3 701 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 FAM107AO95990 144 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 IBSPP21815 317 aaPredicted RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 BIRC2Q13490 618 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 PPP6R3Q5H9R7 873 aaPredicted RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 PIGZQ86VD9 579 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 CCDC13Q8IYE1 715 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 ZBED8Q8IZ13 594 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 PLD5Q8N7P1 536 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 PCDH19Q8TAB3 1148 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 ARHGEF2Q92974 986 aaKnown RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 TNIP3Q96KP6 325 aa22.19■■□□□ 1.14
LIME1-210ENST00000621325 XPO6Q96QU8 1125 aaKnown RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 C11orf84Q9BUA3 381 aaPredicted RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 STMN4Q9H169 189 aaPredicted RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 UPF3AQ9H1J1 476 aaKnown RBP22.19■■□□□ 1.14
LIME1-210ENST00000621325 EBAG9O00559 213 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 SNX16P57768 344 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 CACNB2Q08289 660 aaPredicted RBP22.18■■□□□ 1.14
LIME1-210ENST00000621325 ANKRD20A8PQ5CZ79 823 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 ERMARDQ5T6L9 678 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 DARS2Q6PI48 645 aaKnown RBP22.18■■□□□ 1.14
LIME1-210ENST00000621325 PAQR9Q6ZVX9 377 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 TRAF3IP1Q8TDR0 691 aaPredicted RBP22.18■■□□□ 1.14
LIME1-210ENST00000621325 TIMM13Q9Y5L4 95 aaPredicted RBP22.18■■□□□ 1.14
LIME1-210ENST00000621325 SEPT4O43236 478 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 ADAMTS4O75173 837 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 TCEA3O75764 348 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 RABGGTBP53611 331 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 PDIA2Q13087 525 aaKnown RBP22.18■■□□□ 1.14
LIME1-210ENST00000621325 TFDP2Q14188 446 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 MSS51Q4VC12 460 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 NAT8LQ8N9F0 302 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 TEKT4Q8WW24 435 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 ATXN2LQ8WWM7 1075 aaKnown RBP22.18■■□□□ 1.14
LIME1-210ENST00000621325 HEY1Q9Y5J3 304 aa22.18■■□□□ 1.14
LIME1-210ENST00000621325 CCND3P30281 292 aaPredicted RBP22.17■■□□□ 1.14
LIME1-210ENST00000621325 PTPN9P43378 593 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 CLCNKBP51801 687 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 ROR1Q01973 937 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 PDK2Q15119 407 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 QPCTQ16769 361 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 FNBP1LQ5T0N5 605 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 RSPH3Q86UC2 560 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 ANKMY2Q8IV38 441 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 MAP7D3Q8IWC1 876 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 PPIL6Q8IXY8 311 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 C3orf58Q8NDZ4 430 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 HNRNPABQ99729 332 aaKnown RBP22.17■■□□□ 1.14
LIME1-210ENST00000621325 PAAF1Q9BRP4 392 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 SPC25Q9HBM1 224 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 NAALADL1Q9UQQ1 740 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 SRRM3A6NNA2 597 aaPredicted RBP22.17■■□□□ 1.14
LIME1-210ENST00000621325 TMEM63AO94886 807 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 ASGR1P07306 291 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 PTPN1P18031 435 aaKnown RBP22.17■■□□□ 1.14
LIME1-210ENST00000621325 ADIGQ0VDE8 80 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 SYCP2LQ5T4T6 812 aa22.17■■□□□ 1.14
LIME1-210ENST00000621325 CENPIQ92674 756 aaPredicted RBP22.17■■□□□ 1.14
LIME1-210ENST00000621325 SENP8Q96LD8 212 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms