RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CD48P09326 243 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 IFNAR2P48551 515 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 PEX5P50542 639 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 OGDHQ02218 1023 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 EP400NLQ6ZTU2 488 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 FAM35AQ86V20 835 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 OSTM1Q86WC4 334 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 RASGEF1CQ8N431 466 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 DNAAF3Q8N9W5 541 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 PYROXD1Q8WU10 500 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 SMARCD1Q96GM5 515 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 PCED1BQ96HM7 432 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 DCLK3Q9C098 648 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 KANSL3Q9P2N6 904 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 PTGESO14684 152 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 IVLP07476 585 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 EPHB2P29323 1055 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 DDR2Q16832 855 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 TMEM86AQ8N2M4 240 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 WDTC1Q8N5D0 677 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 TOP6BLQ8N6T0 577 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 LINC01465Q8N7H1 131 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 USP33Q8TEY7 942 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 CFAP36Q96G28 342 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 YME1L1Q96TA2 773 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 WDCPQ9H6R7 721 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 CYTH4Q9UIA0 394 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 H3BRJ5 948 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 EEF2KO00418 725 aaKnown RBP16.39■□□□□ 0.21
CPSF1-213ENST00000620219 PAPSS1O43252 624 aaPredicted RBP16.39■□□□□ 0.21
CPSF1-213ENST00000620219 ZNF143P52747 638 aaPredicted RBP16.39■□□□□ 0.21
CPSF1-213ENST00000620219 SLC29A2Q14542 456 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 KDELC2Q7Z4H8 507 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 IQCGQ9H095 443 aaKnown RBP16.39■□□□□ 0.21
CPSF1-213ENST00000620219 SEMA4AQ9H3S1 761 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 VIPAS39Q9H9C1 493 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 MLXIPLQ9NP71 852 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 NENFQ9UMX5 172 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 DFFAO00273 331 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 CES2O00748 559 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 RASGRF2O14827 1237 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 HGSO14964 777 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-213ENST00000620219 SYF2O95926 243 aaKnown RBP16.38■□□□□ 0.21
CPSF1-213ENST00000620219 NR1D1P20393 614 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 AMPD1P23109 780 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 GUCY1A3Q02108 690 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 ZSCAN26Q16670 478 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 ATAD1Q8NBU5 361 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 SLITRK1Q96PX8 696 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 STMN4Q9H169 189 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-213ENST00000620219 KDELR1P24390 212 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 CYP2F1P24903 491 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 RPL9P32969 192 aaKnown RBP16.38■□□□□ 0.21
CPSF1-213ENST00000620219 FNTAP49354 379 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 MAGOHP61326 146 aaKnown RBP16.38■□□□□ 0.21
CPSF1-213ENST00000620219 MAPRE1Q15691 268 aaKnown RBP16.38■□□□□ 0.21
CPSF1-213ENST00000620219 KATNAL2Q8IYT4 538 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 GIPC2Q8TF65 315 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 RBM15Q96T37 977 aaKnown RBP eCLIP16.38■□□□□ 0.217e-7■■□□□ 12.2
CPSF1-213ENST00000620219 NCAPGQ9BPX3 1015 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 BTG3Q14201 252 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-213ENST00000620219 PID1Q7Z2X4 250 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 BHMTQ93088 406 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 TBCBQ99426 244 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 DUSP16Q9BY84 665 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 OSBPL7Q9BZF2 842 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 DMAP1Q9NPF5 467 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-213ENST00000620219 DSEQ9UL01 958 aa16.38■□□□□ 0.21
CPSF1-213ENST00000620219 LOXHD1Q8IVV2 1947 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 NDUFAB1O14561 156 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 PRRG1O14668 218 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 MGEA5O60502 916 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 TMED2Q15363 201 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 BCAS4Q8TDM0 211 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 SLC12A6Q9UHW9 1150 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 C10orf120Q5SQS8 335 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 ZNF280DQ6N043 979 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 CENPUQ71F23 418 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 ZNF280BQ86YH2 543 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 OLIG1Q8TAK6 271 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 HHIPL1Q96JK4 782 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 SNRNP25Q9BV90 132 aaKnown RBP16.37■□□□□ 0.21
CPSF1-213ENST00000620219 NAALADL1Q9UQQ1 740 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 EXOC1LA0A1B0GW35 172 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 F8W810 466 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 CCDC13Q8IYE1 715 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 CCDC63Q8NA47 563 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 CWC15Q9P013 229 aaKnown RBP16.37■□□□□ 0.21
CPSF1-213ENST00000620219 SCAMP3O14828 347 aaKnown RBP16.37■□□□□ 0.21
CPSF1-213ENST00000620219 LPXNO60711 386 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 KCNE1P15382 129 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 EFEMP1Q12805 493 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 IKBKEQ14164 716 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 DCLRE1AQ6PJP8 1040 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 OTOP2Q7RTS6 562 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 CCHCR1Q8TD31 782 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 FTHL17Q9BXU8 183 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 CDH9Q9ULB4 789 aa16.37■□□□□ 0.21
CPSF1-213ENST00000620219 LTFP02788 710 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 VIMP08670 466 aaKnown RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms