RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ARID5AQ03989 594 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 CHRNEQ04844 493 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ZBTB16Q05516 673 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 CTTNQ14247 550 aaKnown RBP10.62□□□□□ -0.71
VPS39-214ENST00000614932 TRIP10Q15642 601 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 PLEKHG4Q58EX7 1191 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ARSHQ5FYA8 562 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 FAM26FQ5R3K3 315 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 PPP1R18Q6NYC8 613 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 RSBN1LQ6PCB5 846 aaPredicted RBP10.62□□□□□ -0.71
VPS39-214ENST00000614932 TUBA3EQ6PEY2 450 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 IYDQ6PHW0 289 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 TPCN2Q8NHX9 752 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 PEX13Q92968 403 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 PSD2Q9BQI7 771 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 MAGEF1Q9HAY2 307 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 SEPT10Q9P0V9 454 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 KANSL3Q9P2N6 904 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ANKFY1Q9P2R3 1169 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 RGS17Q9UGC6 210 aaPredicted RBP10.62□□□□□ -0.71
VPS39-214ENST00000614932 ADAMTS1Q9UHI8 967 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 MYO3BQ8WXR4 1341 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 SYCE1LA8MT33 242 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 GOLGA8MH3BSY2 632 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 FOXD2O60548 495 aaPredicted RBP10.61□□□□□ -0.71
VPS39-214ENST00000614932 DNAJA2O60884 412 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 TCEA3O75764 348 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 FKBP9O95302 570 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 ZNF23P17027 643 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 JAK1P23458 1154 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 CHKAP35790 457 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 ETFBP38117 255 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 RALGDSQ12967 914 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 TRIM16LQ309B1 348 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 SGO2Q562F6 1265 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 CENPPQ6IPU0 288 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 SLFN11Q7Z7L1 901 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 HACE1Q8IYU2 909 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 SYCE1Q8N0S2 351 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 THAP11Q96EK4 314 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 TTC25Q96NG3 672 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 CAMKK2Q96RR4 588 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 SH2D3AQ9BRG2 576 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 CDH19Q9H159 772 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 C12orf4Q9NQ89 552 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 HOMER2Q9NSB8 354 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 DDX56Q9NY93 547 aaKnown RBP10.61□□□□□ -0.71
VPS39-214ENST00000614932 DCTN4Q9UJW0 460 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 PCDHGA8Q9Y5G5 932 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 EMSYQ7Z589 1322 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 SIPA1L1O43166 1804 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 A6NL46 340 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 EML1O00423 815 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 FAM58BPP0C7Q3 252 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 CTRB1P17538 263 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 NIPAL4Q0D2K0 466 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 MAN2A1Q16706 1144 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 GRAMD1BQ3KR37 738 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 CTRB2Q6GPI1 263 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 RNF111Q6ZNA4 994 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 KSR1Q8IVT5 923 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 CPXCR1Q8N123 301 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.61□□□□□ -0.71
VPS39-214ENST00000614932 DENND1AQ8TEH3 1009 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 PYDC1Q8WXC3 89 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 ART4Q93070 314 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 CDHR1Q96JP9 859 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 DHRS9Q9BPW9 319 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 BMP2KQ9NSY1 1161 aaPredicted RBP10.61□□□□□ -0.71
VPS39-214ENST00000614932 ARMC1Q9NVT9 282 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 TBK1Q9UHD2 729 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 RAB26Q9ULW5 256 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 NAALADL1Q9UQQ1 740 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 ERGIC3Q9Y282 383 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 DIS3Q9Y2L1 958 aaKnown RBP10.61□□□□□ -0.71
VPS39-214ENST00000614932 IKBKGQ9Y6K9 419 aa10.61□□□□□ -0.71
VPS39-214ENST00000614932 KPNA4O00629 521 aaPredicted RBP10.6□□□□□ -0.71
VPS39-214ENST00000614932 MSH4O15457 936 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 CLOCKO15516 846 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 CDH16O75309 829 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 SRGAP2CP0DJJ0 459 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 SRGAP2BP0DMP2 458 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 EPS15P42566 896 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 PTGIRP43119 386 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 BASP1P80723 227 aaKnown RBP10.6□□□□□ -0.71
VPS39-214ENST00000614932 SPARTQ8N0X7 666 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 SLC25A41Q8N5S1 370 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 TRIML2Q8N7C3 387 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.6□□□□□ -0.71
VPS39-214ENST00000614932 GSDMBQ8TAX9 411 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 FERMT1Q9BQL6 677 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 THTPAQ9BU02 230 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 ERVK-5Q9HDB9 667 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 TBC1D14Q9P2M4 693 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 PLA2G4CQ9UP65 541 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 GPSM3Q9Y4H4 160 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 DTNAQ9Y4J8 743 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 ANGPTL3Q9Y5C1 460 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 PVALEFA0A1B0GWK0 134 aa10.6□□□□□ -0.71
VPS39-214ENST00000614932 CASQ2O14958 399 aaPredicted RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms