RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 LTB4R2Q9NPC1 389 aa12.73□□□□□ -0.37
SHKBP1-213ENST00000597325 MRPL17Q9NRX2 175 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-213ENST00000597325 CHST7Q9NS84 486 aa12.73□□□□□ -0.37
SHKBP1-213ENST00000597325 MTRRQ9UBK8 725 aa12.73□□□□□ -0.37
SHKBP1-213ENST00000597325 PCDHGC3Q9UN70 934 aa12.73□□□□□ -0.37
SHKBP1-213ENST00000597325 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHKBP1-213ENST00000597325 NME7Q9Y5B8 376 aa12.73□□□□□ -0.37
SHKBP1-213ENST00000597325 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHKBP1-213ENST00000597325 NUMBLQ9Y6R0 609 aa12.73□□□□□ -0.37
SHKBP1-213ENST00000597325 O00370 1275 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 FOXD2O60548 495 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 ATP2C2O75185 946 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 MICAL2O94851 1124 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 KCNK5O95279 499 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 NDUFA10O95299 355 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 LSM8O95777 96 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 CCDC130P13994 396 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 ADORA2BP29275 332 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 RPS9P46781 194 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 BCAT1P54687 386 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 ARPP19P56211 112 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 FMO1Q01740 532 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 MRPL58Q14197 206 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 MLF2Q15773 248 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 CNGA2Q16280 664 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 SLC18A3Q16572 532 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 NFE2Q16621 373 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 SLC39A12Q504Y0 691 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 PPP1R2P3Q6NXS1 205 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 PRSS55Q6UWB4 352 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 C4orf50Q6ZRC1 276 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 SPATA2LQ8IUW3 424 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 PASD1Q8IV76 773 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 C12orf29Q8N999 325 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 TMEM35BQ8NCS4 154 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 MSANTD4Q8NCY6 345 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 SLC2A14Q8TDB8 520 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 MYLPFQ96A32 169 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 CYFIP2Q96F07 1278 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 NOX5Q96PH1 765 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 ZCWPW1Q9H0M4 648 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 CRTAC1Q9NQ79 661 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 SPTLC3Q9NUV7 552 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 ADAMTS1Q9UHI8 967 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 TSPAN16Q9UKR8 245 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 BACE2Q9Y5Z0 518 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 EPN1Q9Y6I3 576 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 VWA8A3KMH1 1905 aa12.72□□□□□ -0.37
SHKBP1-213ENST00000597325 GREB1Q4ZG55 1949 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 A0A087X0T9 212 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 MYBPHLA2RUH7 354 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 EIF3CLB5ME19 914 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 OR4Q2P0C623 313 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 FAM228BP0C875 321 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 FAM200BP0CF97 657 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 CHRNB2P17787 502 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 CD72P21854 359 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 NSFP46459 744 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 KRT83P78385 493 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 GFPT1Q06210 699 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 SMARCB1Q12824 385 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 MTF1Q14872 753 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 SLC44A4Q53GD3 710 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 PPP1R26Q5T8A7 1209 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 NAA35Q5VZE5 725 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 LCLAT1Q6UWP7 414 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 RSPO2Q6UXX9 243 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 RAD9BQ6WBX8 426 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 FAM35AQ86V20 835 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 GPR65Q8IYL9 337 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 TXLNBQ8N3L3 684 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 ST13P5Q8NFI4 369 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 LNX1Q8TBB1 728 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 SMARCD1Q96GM5 515 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 PCED1BQ96HM7 432 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 KLHL5Q96PQ7 755 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 EIF3CQ99613 913 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 HNRNPABQ99729 332 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 ZSWIM1Q9BR11 485 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 SYT11Q9BT88 431 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 KRT82Q9NSB4 513 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 RXFP3Q9NSD7 469 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 GTF3C4Q9UKN8 822 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 CDY1Q9Y6F8 540 aa12.71□□□□□ -0.37
SHKBP1-213ENST00000597325 CCDC195A0A1B0GUA6 201 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 SPDYE4A6NLX3 237 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 DDX3XO00571 662 aaKnown RBP eCLIP12.7□□□□□ -0.383e-6■■■□□ 15.7
SHKBP1-213ENST00000597325 LILRB3O75022 631 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 CNPP09543 421 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 CCDC175P0C221 793 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 SETSIPP0DME0 302 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 TARSP26639 723 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 NRLP54845 237 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 BST2Q10589 180 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 MTAPQ13126 283 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 CLEC16AQ2KHT3 1053 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 ASTE1Q2TB18 679 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 CCDC122Q5T0U0 273 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 C10orf76Q5T2E6 689 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms