RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 ZNF292O60281 2723 aa13.25□□□□□ -0.29
UPF1-203ENST00000594504 TRIM49BA6NDI0 452 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 IKBKBO14920 756 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 SLC16A3O15427 465 aaKnown RBP13.24□□□□□ -0.29
UPF1-203ENST00000594504 VNN1O95497 513 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 STAU1O95793 577 aaKnown RBP13.24□□□□□ -0.29
UPF1-203ENST00000594504 EPB41P11171 864 aaKnown RBP13.24□□□□□ -0.29
UPF1-203ENST00000594504 PFKLP17858 780 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 BCKDHBP21953 392 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 YWHAQP27348 245 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 ATICP31939 592 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 TIE1P35590 1138 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 PPP3CCP48454 512 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 PDE6CP51160 858 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 VAMP7P51809 220 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 PAK1Q13153 545 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 BIRC3Q13489 604 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 ANO7Q6IWH7 933 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 SCARA5Q6ZMJ2 495 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 FRMD1Q8N878 549 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 NELFBQ8WX92 580 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 FBXO32Q969P5 355 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 SYAP1Q96A49 352 aaPredicted RBP13.24□□□□□ -0.29
UPF1-203ENST00000594504 ELOVL4Q9GZR5 314 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 EHD2Q9NZN4 543 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 CTNND2Q9UQB3 1225 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 SPAG17Q6Q759 2223 aa13.24□□□□□ -0.29
UPF1-203ENST00000594504 THADAQ6YHU6 1953 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 COCHO43405 550 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 FOXD2O60548 495 aaPredicted RBP13.23□□□□□ -0.29
UPF1-203ENST00000594504 BEST1O76090 585 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 RHOBTB1O94844 696 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 CAVIN2O95810 425 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 PGFP49763 221 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 LIMK1P53667 647 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 MCCD1P59942 119 aaPredicted RBP13.23□□□□□ -0.29
UPF1-203ENST00000594504 KDSRQ06136 332 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 CRY1Q16526 586 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 ZNF667Q5HYK9 610 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 TTI2Q6NXR4 508 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 ACOT1Q86TX2 421 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 FAM35AQ86V20 835 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 ABCA7Q8IZY2 2146 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 ALLCQ8N6M5 410 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 NAT16Q8N8M0 369 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 MLKLQ8NB16 471 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 TXNDC5Q8NBS9 432 aaKnown RBP13.23□□□□□ -0.29
UPF1-203ENST00000594504 RLN3Q8WXF3 142 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 EEF2KMTQ96G04 330 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 CEP63Q96MT8 703 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 SLITRK1Q96PX8 696 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 PNKPQ96T60 521 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 CCSER2Q9H7U1 834 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.23□□□□□ -0.29
UPF1-203ENST00000594504 VPS45Q9NRW7 570 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 MMP17Q9ULZ9 603 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 PCDHGA5Q9Y5G8 931 aa13.23□□□□□ -0.29
UPF1-203ENST00000594504 BCLAF3A2AJT9 711 aaKnown RBP13.22□□□□□ -0.29
UPF1-203ENST00000594504 PATE3B3GLJ2 98 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 SGK1O00141 431 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 TNFRSF10BO14763 440 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 KAT7O95251 611 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 KLF8O95600 359 aaPredicted RBP13.22□□□□□ -0.29
UPF1-203ENST00000594504 CCDC130P13994 396 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 NCOA4Q13772 614 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 ELF2Q15723 593 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 ZNF699Q32M78 642 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 ZACNQ401N2 412 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 USP39Q53GS9 565 aaKnown RBP13.22□□□□□ -0.29
UPF1-203ENST00000594504 LY6G5CQ5SRR4 150 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 C1orf220Q5T0J3 134 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 RNF43Q68DV7 783 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 SPOPLQ6IQ16 392 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 RASSF3Q86WH2 238 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 ZMIZ2Q8NF64 920 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 MDGA1Q8NFP4 955 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 ZFRQ96KR1 1074 aaKnown RBP13.22□□□□□ -0.29
UPF1-203ENST00000594504 SMOQ99835 787 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 DUSP9Q99956 384 aaKnown RBP13.22□□□□□ -0.29
UPF1-203ENST00000594504 GMIPQ9P107 970 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 HMGXB4Q9UGU5 601 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 CEP250Q9BV73 2442 aa13.22□□□□□ -0.29
UPF1-203ENST00000594504 C4orf47A7E2U8 309 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 SLC9A3R1O14745 358 aaPredicted RBP13.21□□□□□ -0.29
UPF1-203ENST00000594504 TRIM24O15164 1050 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 STX10O60499 249 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 RTN3O95197 1032 aaPredicted RBP13.21□□□□□ -0.29
UPF1-203ENST00000594504 KCNK5O95279 499 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 APODP05090 189 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 TRIM49P0CI25 452 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 TRIM49CP0CI26 452 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 IRF1P10914 325 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 CHRM1P11229 460 aaPredicted RBP13.21□□□□□ -0.29
UPF1-203ENST00000594504 ADH5P11766 374 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 GTF2H1P32780 548 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 KIR2DL1P43626 348 aaPredicted RBP13.21□□□□□ -0.29
UPF1-203ENST00000594504 SLC5A3P53794 718 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 MRPS21P82921 87 aaKnown RBP13.21□□□□□ -0.29
UPF1-203ENST00000594504 HECTD3Q5T447 861 aa13.21□□□□□ -0.29
UPF1-203ENST00000594504 PMS2CLQ68D20 193 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms