RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 MED7O43513 233 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 AKR1B10O60218 316 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 CILPO75339 1184 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 IPO7O95373 1038 aaKnown RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 PAEPP09466 180 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 FAM163BP0C2L3 166 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 CYP11B1P15538 503 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 GLB1P16278 677 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 TYMPP19971 482 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 WARSP23381 471 aaKnown RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 IGFBP6P24592 240 aaPredicted RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 ACAT1P24752 427 aaKnown RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 PCSK1P29120 753 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 TKTP29401 623 aaKnown RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 CA8P35219 290 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 CTNNB1P35222 781 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 GRIA4P48058 902 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 AARSP49588 968 aaKnown RBP eCLIP5.63□□□□□ -1.51
LIG3-210ENST00000588109 TSPY1Q01534 308 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 KRT17Q04695 432 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 YWHAHQ04917 246 aaPredicted RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 INCA1Q0VD86 236 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 DOC2BQ14184 412 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 RASIP1Q5U651 963 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 TAF3Q5VWG9 929 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 E4F1Q66K89 784 aaPredicted RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 OVOS1Q6IE37 1185 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 ZNF280DQ6N043 979 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 ADAMTSL4Q6UY14 1074 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 ACAD11Q709F0 780 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 VN1R5Q7Z5H4 357 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 ACOT1Q86TX2 421 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 SLC47A2Q86VL8 602 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 UNC93AQ86WB7 457 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 OSTM1Q86WC4 334 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 TMEM173Q86WV6 379 aaPredicted RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 TMTC1Q8IUR5 882 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 SLC39A11Q8N1S5 342 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 UBR7Q8N806 425 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 SPATA18Q8TC71 538 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 FBF1Q8TES7 1133 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 KBTBD7Q8WVZ9 684 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 TMEM176AQ96HP8 235 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 IGSF21Q96ID5 467 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 TNIP3Q96KP6 325 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 B3GALT6Q96L58 329 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 CCDC42Q96M95 316 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 HEXIM2Q96MH2 286 aaKnown RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 ZNF830Q96NB3 372 aaPredicted RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 GDF15Q99988 308 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 SYT15Q9BQS2 421 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 ELOVL4Q9GZR5 314 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 HAUS4Q9H6D7 363 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 SPG21Q9NZD8 308 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 HMGXB4Q9UGU5 601 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 MSRAQ9UJ68 235 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 MTUS1Q9ULD2 1270 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 STXBP5LQ9Y2K9 1186 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 RWDD3Q9Y3V2 267 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 BZW2Q9Y6E2 419 aaKnown RBP5.63□□□□□ -1.51
LIG3-210ENST00000588109 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 LINC01553A4QN01 128 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 ANKRD33BA6NCL7 494 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 H7C4K7 107 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 DDX3YO15523 660 aaKnown RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 ARHGAP6O43182 974 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 SART1O43290 800 aaKnown RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 HCRTO43612 131 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 FGF18O76093 207 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 CSPG5O95196 566 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 CALCAP01258 141 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 SOD2P04179 222 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 ITGB2P05107 769 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 CYP11A1P05108 521 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 URODP06132 367 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 CA3P07451 260 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 PLEKP08567 350 aaPredicted RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 VDRP11473 427 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 ESRRAP11474 423 aaPredicted RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 MYOGP15173 224 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 TNFAIP3P21580 790 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 LMO2P25791 158 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 HNRNPH3P31942 346 aaKnown RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 CYLC1P35663 651 aaPredicted RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 EIF4A3P38919 411 aaKnown RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 PRKCIP41743 596 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 GLUD2P49448 558 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 RGS19P49795 217 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 ZNF132P52740 706 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 RAD23BP54727 409 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 ARPP19P56211 112 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 PSMC1P62191 440 aaKnown RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 CDK17Q00537 523 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 CDR2Q01850 454 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 CYP27A1Q02318 531 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 BMS1Q14692 1282 aaKnown RBP5.62□□□□□ -1.51
LIG3-210ENST00000588109 SPA17Q15506 151 aa5.62□□□□□ -1.51
LIG3-210ENST00000588109 RAB30Q15771 203 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms