RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 IFRD2Q12894 506 aaPredicted RBP11.24□□□□□ -0.61
RFFL-209ENST00000581265 BIRC3Q13489 604 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 CUL4BQ13620 913 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 NCOA4Q13772 614 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 SGSM1Q2NKQ1 1148 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 ZNF699Q32M78 642 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 ZNF667Q5HYK9 610 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 SPDYCQ5MJ68 293 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 EOGTQ5NDL2 527 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 RESP18Q5W5W9 173 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 ATL3Q6DD88 541 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 FAM35AQ86V20 835 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 C12orf40Q86WS4 652 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 ETFBKMTQ8IXQ9 262 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 FUKQ8N0W3 1084 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 CRYBG2Q8N1P7 616 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 TXNDC5Q8NBS9 432 aaKnown RBP11.24□□□□□ -0.61
RFFL-209ENST00000581265 FBXO32Q969P5 355 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 SNX21Q969T3 373 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 SMARCD1Q96GM5 515 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 TMEM121BQ9BXQ6 578 aaPredicted RBP11.24□□□□□ -0.61
RFFL-209ENST00000581265 SMYD3Q9H7B4 428 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 POLMQ9NP87 494 aaPredicted RBP11.24□□□□□ -0.61
RFFL-209ENST00000581265 DMAP1Q9NPF5 467 aaPredicted RBP11.24□□□□□ -0.61
RFFL-209ENST00000581265 ARHGEF4Q9NR80 690 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 FAM13BQ9NYF5 915 aa11.24□□□□□ -0.61
RFFL-209ENST00000581265 HELZP42694 1942 aaKnown RBP11.24□□□□□ -0.61
RFFL-209ENST00000581265 KIAA1549LQ6ZVL6 1849 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 THADAQ6YHU6 1953 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 NUP205Q92621 2012 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 ZFYVE26Q68DK2 2539 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 LRRIQ3A6PVS8 624 aaPredicted RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 CDX4O14627 284 aaPredicted RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 HOXC11O43248 304 aaPredicted RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 KLRC4O43908 158 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 ADAM23O75077 832 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 VNN1O95497 513 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 RPN1P04843 607 aaKnown RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 SLFN14P0C7P3 912 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 ZSCAN22P10073 491 aaPredicted RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 RDXP35241 583 aaKnown RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 ME1P48163 572 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 SLC5A3P53794 718 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 IRX4P78413 519 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 STK4Q13043 487 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 BYSLQ13895 437 aaKnown RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 PREPLQ4J6C6 727 aaPredicted RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 SOWAHCQ53LP3 525 aaPredicted RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 HTR3DQ70Z44 454 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 LPCAT2Q7L5N7 544 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 CYP2U1Q7Z449 544 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 ACOT1Q86TX2 421 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 PDZD3Q86UT5 571 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 WHAMMQ8TF30 809 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 MED10Q9BTT4 135 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 SDCBP2Q9H190 292 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 CCSER2Q9H7U1 834 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 CSNK1G1Q9HCP0 422 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 TMEM9BQ9NQ34 198 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 SPHK2Q9NRA0 654 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 DEC1Q9P2X7 70 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 EVLQ9UI08 416 aaPredicted RBP11.23□□□□□ -0.61
RFFL-209ENST00000581265 RCOR1Q9UKL0 485 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 SH3BP1Q9Y3L3 701 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 STARD13Q9Y3M8 1113 aa11.23□□□□□ -0.61
RFFL-209ENST00000581265 TBC1D3BA6NDS4 549 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 PATE3B3GLJ2 98 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 PDXKO00764 312 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 IKBKBO14920 756 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 MAP3K13O43283 966 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 GREM1O60565 184 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 TULP3O75386 442 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 AP1G2O75843 785 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 BEST1O76090 585 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 P4HA1P13674 534 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 CSRP1P21291 193 aaKnown RBP11.22□□□□□ -0.61
RFFL-209ENST00000581265 DHPSP49366 369 aaPredicted RBP11.22□□□□□ -0.61
RFFL-209ENST00000581265 MAP7D1Q3KQU3 841 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 UAP1L1Q3KQV9 507 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 ZACNQ401N2 412 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 FOXD4L5Q5VV16 416 aaPredicted RBP11.22□□□□□ -0.61
RFFL-209ENST00000581265 BTBD8Q5XKL5 378 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 NUDT18Q6ZVK8 323 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 UNC93AQ86WB7 457 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 TTC30AQ86WT1 665 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 TMEM25Q86YD3 366 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 SYT12Q8IV01 421 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 BBS7Q8IWZ6 715 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 NAT16Q8N8M0 369 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 KIAA0895Q8NCT3 520 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 ZMIZ2Q8NF64 920 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 TMC2Q8TDI7 906 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 RLN3Q8WXF3 142 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 FOXD4L4Q8WXT5 416 aaPredicted RBP11.22□□□□□ -0.61
RFFL-209ENST00000581265 PIGKQ92643 395 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 TAF4BQ92750 862 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 SPACA7Q96KW9 195 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 SMOQ99835 787 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 KCTD10Q9H3F6 313 aa11.22□□□□□ -0.61
RFFL-209ENST00000581265 FBXO44Q9H4M3 255 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms