RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 UBXN6Q9BZV1 441 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 LINC00597Q9H2U6 94 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 CYLDQ9NQC7 956 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 KIAA1257Q9ULG3 409 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 SPECC1L-ADORA2AF8WAN1 911 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 MDM4O15151 490 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 GALR2O43603 387 aaPredicted RBP21.19■□□□□ 0.98
SS18-218ENST00000581021 PNMA6AP0CW24 399 aaPredicted RBP21.19■□□□□ 0.98
SS18-218ENST00000581021 PLA2G4AP47712 749 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 KPNA1P52294 538 aaPredicted RBP21.19■□□□□ 0.98
SS18-218ENST00000581021 CNGA2Q16280 664 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 ARHGAP44Q17R89 818 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 ITPRIPL2Q3MIP1 535 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 DTWD2Q8NBA8 298 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 FAM3CQ92520 227 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 SHC3Q92529 594 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 SECISBP2LQ93073 1101 aaKnown RBP21.19■□□□□ 0.98
SS18-218ENST00000581021 TLR8Q9NR97 1041 aaKnown RBP21.19■□□□□ 0.98
SS18-218ENST00000581021 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.19■□□□□ 0.98
SS18-218ENST00000581021 CFAP97Q9P2B7 532 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 HESX1Q9UBX0 185 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 NUDT5Q9UKK9 219 aa21.19■□□□□ 0.98
SS18-218ENST00000581021 NDRG2Q9UN36 371 aaKnown RBP21.19■□□□□ 0.98
SS18-218ENST00000581021 MIA3Q5JRA6 1907 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 M0QYV0 167 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 ZNF18P17022 549 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 TKTL1P51854 596 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 MLLT6P55198 1093 aaPredicted RBP21.18■□□□□ 0.98
SS18-218ENST00000581021 MYL5Q02045 173 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 RUNX3Q13761 415 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 CC2D1AQ6P1N0 951 aaPredicted RBP21.18■□□□□ 0.98
SS18-218ENST00000581021 ENOSF1Q7L5Y1 443 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 SLC35F5Q8WV83 523 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 CLDN23Q96B33 292 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 FUCA2Q9BTY2 467 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 OSBPL6Q9BZF3 934 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 ULBP1Q9BZM6 244 aa21.18■□□□□ 0.98
SS18-218ENST00000581021 DUS2Q9NX74 493 aaKnown RBP21.18■□□□□ 0.98
SS18-218ENST00000581021 GREM1O60565 184 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 SETSIPP0DME0 302 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 RGS7P49802 495 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 MFAP3P55082 362 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 ADIGQ0VDE8 80 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 PDGFRLQ15198 375 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 KLHL40Q2TBA0 621 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 ANO6Q4KMQ2 910 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 PMF1Q6P1K2 205 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 DENND1BQ6P3S1 775 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 APTXQ7Z2E3 356 aaKnown RBP21.17■□□□□ 0.98
SS18-218ENST00000581021 KCNH6Q9H252 994 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 VPS16Q9H269 839 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 C8orf33Q9H7E9 229 aaPredicted RBP21.17■□□□□ 0.98
SS18-218ENST00000581021 NAGPAQ9UK23 515 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 DNAJC12Q9UKB3 198 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 ARIH1Q9Y4X5 557 aaPredicted RBP21.17■□□□□ 0.98
SS18-218ENST00000581021 FHOD1Q9Y613 1164 aa21.17■□□□□ 0.98
SS18-218ENST00000581021 MAN2B1O00754 1011 aa21.16■□□□□ 0.98
SS18-218ENST00000581021 RARGP13631 454 aa21.16■□□□□ 0.98
SS18-218ENST00000581021 IFNAR2P48551 515 aa21.16■□□□□ 0.98
SS18-218ENST00000581021 KLK7P49862 253 aa21.16■□□□□ 0.98
SS18-218ENST00000581021 GAB4Q2WGN9 574 aa21.16■□□□□ 0.98
SS18-218ENST00000581021 PM20D1Q6GTS8 502 aa21.16■□□□□ 0.98
SS18-218ENST00000581021 RALGPS2Q86X27 583 aaPredicted RBP21.16■□□□□ 0.98
SS18-218ENST00000581021 AOPEPQ8N6M6 819 aa21.16■□□□□ 0.98
SS18-218ENST00000581021 KCTD13Q8WZ19 329 aa21.16■□□□□ 0.98
SS18-218ENST00000581021 KLF16Q9BXK1 252 aaPredicted RBP21.16■□□□□ 0.98
SS18-218ENST00000581021 ECT2Q9H8V3 914 aa21.16■□□□□ 0.98
SS18-218ENST00000581021 PIK3R2O00459 728 aa21.15■□□□□ 0.98
SS18-218ENST00000581021 PES1O00541 588 aaKnown RBP21.15■□□□□ 0.98
SS18-218ENST00000581021 ZBED1O96006 694 aa21.15■□□□□ 0.98
SS18-218ENST00000581021 NUBP1P53384 320 aa21.15■□□□□ 0.98
SS18-218ENST00000581021 SLC8A3P57103 927 aa21.15■□□□□ 0.98
SS18-218ENST00000581021 PON2Q15165 354 aa21.15■□□□□ 0.98
SS18-218ENST00000581021 KLHDC7AQ5VTJ3 777 aa21.15■□□□□ 0.98
SS18-218ENST00000581021 MSANTD3Q96H12 275 aa21.15■□□□□ 0.98
SS18-218ENST00000581021 LSM14BQ9BX40 385 aaKnown RBP21.15■□□□□ 0.98
SS18-218ENST00000581021 NAA15Q9BXJ9 866 aaKnown RBP21.15■□□□□ 0.98
SS18-218ENST00000581021 FBRSL1Q9HCM7 1045 aaKnown RBP21.15■□□□□ 0.98
SS18-218ENST00000581021 RBM12Q9NTZ6 932 aaKnown RBP21.15■□□□□ 0.98
SS18-218ENST00000581021 CYTH4Q9UIA0 394 aa21.15■□□□□ 0.98
SS18-218ENST00000581021 MYO15AQ9UKN7 3530 aa21.15■□□□□ 0.98
SS18-218ENST00000581021 H0Y858 1186 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 FOXN3O00409 490 aaPredicted RBP21.14■□□□□ 0.97
SS18-218ENST00000581021 LETM1O95202 739 aaPredicted RBP21.14■□□□□ 0.97
SS18-218ENST00000581021 CYP17A1P05093 508 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 IRF1P10914 325 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 CHRNB1P11230 501 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 ATP1A3P13637 1013 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 GNA15P30679 374 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 GJA4P35212 333 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 USP8P40818 1118 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 GPD2P43304 727 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 COPB1P53618 953 aaKnown RBP21.14■□□□□ 0.97
SS18-218ENST00000581021 STILQ15468 1287 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 DHX40Q8IX18 779 aaKnown RBP21.14■□□□□ 0.97
SS18-218ENST00000581021 MAML2Q8IZL2 1156 aaPredicted RBP21.14■□□□□ 0.97
SS18-218ENST00000581021 CLEC4CQ8WTT0 213 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 ZNF606Q8WXB4 792 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 NELL2Q99435 816 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 NACA2Q9H009 215 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms