RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 UBXN6Q9BZV1 441 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 NMUR1Q9HB89 426 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 HESX1Q9UBX0 185 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 DACH1Q9UI36 760 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 KIAA1257Q9ULG3 409 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 E2F8A0AVK6 867 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 GFRA3O60609 400 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 PAEPP09466 180 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 CCR3P51677 355 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 BCAT1P54687 386 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 GCNT1Q02742 428 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 FSTL4Q6MZW2 842 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 TSSK4Q6SA08 328 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 MAMSTRQ6ZN01 415 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 PIGZQ86VD9 579 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 SYNPOQ8N3V7 929 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 SPEM1Q8N4L4 309 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 NKD2Q969F2 451 aaPredicted RBP25.17■■□□□ 1.62
SHMT1-206ENST00000579558 P2RY13Q9BPV8 354 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 CYLDQ9NQC7 956 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 OSER1Q9NX31 292 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 SH3BP1Q9Y3L3 701 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 USP3Q9Y6I4 520 aa25.17■■□□□ 1.62
SHMT1-206ENST00000579558 GOLGA6L22H0YM25 854 aa25.16■■□□□ 1.62
SHMT1-206ENST00000579558 TBX18O95935 607 aa25.16■■□□□ 1.62
SHMT1-206ENST00000579558 IRF1P10914 325 aa25.16■■□□□ 1.62
SHMT1-206ENST00000579558 ATP5C1P36542 298 aaKnown RBP25.16■■□□□ 1.62
SHMT1-206ENST00000579558 GALK1P51570 392 aa25.16■■□□□ 1.62
SHMT1-206ENST00000579558 PPP2R5DQ14738 602 aa25.16■■□□□ 1.62
SHMT1-206ENST00000579558 NAIF1Q69YI7 327 aaPredicted RBP25.16■■□□□ 1.62
SHMT1-206ENST00000579558 IRF2BP1Q8IU81 584 aa25.16■■□□□ 1.62
SHMT1-206ENST00000579558 TBC1D14Q9P2M4 693 aa25.16■■□□□ 1.62
SHMT1-206ENST00000579558 NAGPAQ9UK23 515 aa25.16■■□□□ 1.62
SHMT1-206ENST00000579558 O00370 1275 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 XPO1O14980 1071 aaKnown RBP25.15■■□□□ 1.62
SHMT1-206ENST00000579558 CYP17A1P05093 508 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 RARGP13631 454 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 MTIF2P46199 727 aaKnown RBP25.15■■□□□ 1.62
SHMT1-206ENST00000579558 CXCL12P48061 93 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 PSEN1P49768 467 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 PDE4CQ08493 712 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 BST2Q10589 180 aaKnown RBP25.15■■□□□ 1.62
SHMT1-206ENST00000579558 RAB41Q5JT25 222 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 SCD5Q86SK9 330 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 RBBP8NLQ8NC74 664 aaPredicted RBP25.15■■□□□ 1.62
SHMT1-206ENST00000579558 CD101Q93033 1021 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 THAP9Q9H5L6 903 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 FBRSL1Q9HCM7 1045 aaKnown RBP25.15■■□□□ 1.62
SHMT1-206ENST00000579558 MTPAPQ9NVV4 582 aaKnown RBP eCLIP25.15■■□□□ 1.62
SHMT1-206ENST00000579558 FANCMQ8IYD8 2048 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 MYO15AQ9UKN7 3530 aa25.15■■□□□ 1.62
SHMT1-206ENST00000579558 PRR23AA6NEV1 266 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 RNF225M0QZC1 329 aaPredicted RBP25.14■■□□□ 1.62
SHMT1-206ENST00000579558 TULP2O00295 520 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 EGFP01133 1207 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 DRD1P21728 446 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 ERCC5P28715 1186 aaPredicted RBP25.14■■□□□ 1.62
SHMT1-206ENST00000579558 SATB1Q01826 763 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 DHCR24Q15392 516 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 ASCL5Q7RTU5 278 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 ADGRG2Q8IZP9 1017 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 UBA3Q8TBC4 463 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 GPT2Q8TD30 523 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 TFAP2BQ92481 460 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 KREMEN1Q96MU8 473 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 CRACR2AQ9BSW2 395 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 NUDT5Q9UKK9 219 aa25.14■■□□□ 1.62
SHMT1-206ENST00000579558 RALAP11233 206 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 TKTL1P51854 596 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 GOLGA8FQ08AF8 430 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 GOLGA8DPQ0D2H9 430 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 C10orf120Q5SQS8 335 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 LCLAT1Q6UWP7 414 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 TADA2BQ86TJ2 420 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 FAM114A1Q8IWE2 563 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 WBP2Q969T9 261 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 OTUB2Q96DC9 234 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 KLF16Q9BXK1 252 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-206ENST00000579558 SEMA4AQ9H3S1 761 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 LRRC4Q9HBW1 653 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 UBE2TQ9NPD8 197 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-206ENST00000579558 ZSCAN32Q9NX65 697 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 DNMT3LQ9UJW3 386 aa25.13■■□□□ 1.61
SHMT1-206ENST00000579558 MDM4O15151 490 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 ADH1CP00326 375 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 SETSIPP0DME0 302 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 BRD2P25440 801 aaKnown RBP25.12■■□□□ 1.61
SHMT1-206ENST00000579558 KLHDC10Q6PID8 442 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 GBP6Q6ZN66 633 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 BBS7Q8IWZ6 715 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 ARHGAP18Q8N392 663 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 FAM126AQ9BYI3 521 aaPredicted RBP25.12■■□□□ 1.61
SHMT1-206ENST00000579558 ULBP1Q9BZM6 244 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 CLIC5Q9NZA1 410 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 PCDHGA2Q9Y5H1 932 aa25.12■■□□□ 1.61
SHMT1-206ENST00000579558 DMDP11532 3685 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 CALCAP01258 141 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 TDGF1P13385 188 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 KRT5P13647 590 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 OPRD1P41143 372 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms