RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GPR32O75388 356 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 ECM2O94769 699 aaPredicted RBP10.5□□□□□ -0.73
VPS53-220ENST00000576149 KRT4P19013 534 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 TGM2P21980 687 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 SDC4P31431 198 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 ATP5OP48047 213 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 CDC42EP1Q00587 391 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 MGAT5Q09328 741 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 TMEM62Q0P6H9 643 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 BNIP1Q12981 228 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 GRB14Q14449 540 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 SLC1A5Q15758 541 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 CCL15Q16663 113 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 SLC9A4Q6AI14 798 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 IQSEC1Q6DN90 963 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 SCYL2Q6P3W7 929 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 FAM47EQ6ZV65 393 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 CATSPER4Q7RTX7 472 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 SESTD1Q86VW0 696 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 UNC93AQ86WB7 457 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 ZDHHC17Q8IUH5 632 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 SCUBE3Q8IX30 993 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 FITM2Q8N6M3 262 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 PQLC3Q8N755 202 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 CCDC63Q8NA47 563 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 BEST2Q8NFU1 509 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 STK32AQ8WU08 396 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 BRI3BPQ8WY22 251 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 RTP4Q96DX8 246 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 RMDN2Q96LZ7 410 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 TINF2Q9BSI4 451 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 EIF2AQ9BY44 585 aaKnown RBP10.5□□□□□ -0.73
VPS53-220ENST00000576149 ADAM33Q9BZ11 813 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 PCDH18Q9HCL0 1135 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 GINS2Q9Y248 185 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 CITO14578 2027 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 MDM4O15151 490 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 ADCY6O43306 1168 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 MGRN1O60291 552 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 ATP2A2P16615 1042 aaKnown RBP10.5□□□□□ -0.73
VPS53-220ENST00000576149 ELK3P41970 407 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 MSH2P43246 934 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 MNAT1P51948 309 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 GTF2A2P52657 109 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 YARSP54577 528 aaKnown RBP10.5□□□□□ -0.73
VPS53-220ENST00000576149 SNX16P57768 344 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 NCALDP61601 193 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 DNAJC3Q13217 504 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 MTM1Q13496 603 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 ARHGAP17Q68EM7 881 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 NOTUMQ6P988 496 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 ALKAL1Q6UXT8 129 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 MAMSTRQ6ZN01 415 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 IGDCC3Q8IVU1 814 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 DCAKDQ8WVC6 231 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 C18orf25Q96B23 403 aaPredicted RBP10.5□□□□□ -0.73
VPS53-220ENST00000576149 NCAPGQ9BPX3 1015 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 SNRNP25Q9BV90 132 aaKnown RBP10.5□□□□□ -0.73
VPS53-220ENST00000576149 FAM49AQ9H0Q0 323 aaPredicted RBP10.5□□□□□ -0.73
VPS53-220ENST00000576149 CDHR5Q9HBB8 845 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 WDR70Q9NW82 654 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 GPATCH2LQ9NWQ4 482 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 CNTN3Q9P232 1028 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 PAK5Q9P286 719 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 HESX1Q9UBX0 185 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 CHMP2BQ9UQN3 213 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 TEX264Q9Y6I9 313 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 BCLAF3A2AJT9 711 aaKnown RBP10.49□□□□□ -0.73
VPS53-220ENST00000576149 CFAP69A5D8W1 941 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 APOL1O14791 398 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 PIAS1O75925 651 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 ZWINTO95229 277 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 HDAC4P56524 1084 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 BCAR1P56945 870 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 ELF3P78545 371 aaPredicted RBP10.49□□□□□ -0.73
VPS53-220ENST00000576149 CA9Q16790 459 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 SOWAHAQ2M3V2 549 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 HHATQ5VTY9 493 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 C9orf57Q5W0N0 161 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 ANKRD23Q86SG2 305 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 ECHDC2Q86YB7 292 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 PCDH19Q8TAB3 1148 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 FBXO41Q8TF61 875 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 SPOCK2Q92563 424 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 FAF2Q96CS3 445 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 CYTH2Q99418 400 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 ZNF670Q9BS34 389 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 B3GNT5Q9BYG0 378 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 ECT2Q9H8V3 914 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 PHTF1Q9UMS5 762 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 HES2Q9Y543 173 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 ZNF487B1APH4 448 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 KCNN4O15554 427 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 EDF1O60869 148 aaKnown RBP10.49□□□□□ -0.73
VPS53-220ENST00000576149 DESP17661 470 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 PAX3P23760 479 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 PTPN9P43378 593 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 CCDC15Q0P6D6 951 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 PCBP1Q15365 356 aaKnown RBP eCLIP10.49□□□□□ -0.73
VPS53-220ENST00000576149 SNCBQ16143 134 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms