RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CEPT1Q9Y6K0 416 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 PABPN1LA6NDY0 278 aaKnown RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 INO80B-WBP1J3KQ70 363 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 NOL4O94818 638 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 CHRNA5P30532 468 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 KRT20P35900 424 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 P2RX3P56373 397 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 ASTE1Q2TB18 679 aaPredicted RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 KLHL38Q2WGJ6 581 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 PXDC1Q5TGL8 231 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 BTBD8Q5XKL5 378 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 USP37Q86T82 979 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 CCDC84Q86UT8 332 aaPredicted RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 PCYOX1LQ8NBM8 494 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 PYDC1Q8WXC3 89 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 GIMAP5Q96F15 307 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 FERMT1Q9BQL6 677 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 MRPS26Q9BYN8 205 aaKnown RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 TLE6Q9H808 572 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 ARL8BQ9NVJ2 186 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 DAPK2Q9UIK4 370 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 SNX24Q9Y343 169 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLK3-226ENST00000569406 COL2A1P02458 1487 aaPredicted RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 SOBPA7XYQ1 873 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 FAM86B1E9PN63 330 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 MED24O75448 989 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 FAM86B2P0C5J1 330 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 SPATA31C1P0DKV0 1188 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 TAC1P20366 129 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 JAK1P23458 1154 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 TNNI2P48788 182 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 ZNF829Q3KNS6 432 aaPredicted RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 FBXL19Q6PCT2 694 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 RIPOR1Q6ZS17 1223 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 GPR141Q7Z602 305 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 IFNL1Q8IU54 200 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 GUF1Q8N442 669 aaKnown RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 HIPK4Q8NE63 616 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.25□□□□□ -0.61
CLK3-226ENST00000569406 MAGEB18Q96M61 343 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 KCTD10Q9H3F6 313 aa11.25□□□□□ -0.61
CLK3-226ENST00000569406 A0A1W2PQJ5 194 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 A8MXQ7 604 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UGT1A9O60656 530 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 ZWINTO95229 277 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 PRKCAP17252 672 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UGT1A6P19224 532 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UGT1A1P22309 533 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UGT1A4P22310 534 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 CFL1P23528 166 aaKnown RBP11.24□□□□□ -0.61
CLK3-226ENST00000569406 PEX2P28328 305 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 FOXN2P32314 431 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UGT1A3P35503 534 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UGT1A5P35504 534 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 STAT3P40763 770 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 SLC12A3P55017 1021 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 PSMC6P62333 389 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 PHC1P78364 1004 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 CDK18Q07002 472 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 DPYSQ14117 519 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 MPP2Q14168 576 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 EPHA7Q15375 998 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 PLEKHA7Q6IQ23 1121 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 AMIGO2Q86SJ2 522 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 CDC26Q8NHZ8 85 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 BCL7CQ8WUZ0 217 aaPredicted RBP11.24□□□□□ -0.61
CLK3-226ENST00000569406 TMIGD2Q96BF3 282 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 PDGFDQ9GZP0 370 aaPredicted RBP11.24□□□□□ -0.61
CLK3-226ENST00000569406 RUBCNLQ9H714 662 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UGT1A7Q9HAW7 530 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UGT1A10Q9HAW8 530 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UGT1A8Q9HAW9 530 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 FARSBQ9NSD9 589 aaKnown RBP11.24□□□□□ -0.61
CLK3-226ENST00000569406 SLC8A2Q9UPR5 921 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 NEU2Q9Y3R4 380 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 CLOCKO15516 846 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 THRAP10827 490 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 NCKAP1LP55160 1127 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 IFITM2Q01629 132 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 STRN3Q13033 797 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 SLC9C1Q4G0N8 1177 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 C6orf132Q5T0Z8 1188 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UBE2UQ5VVX9 321 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 FOXR2Q6PJQ5 311 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 VSTM1Q6UX27 236 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 CDAN1Q8IWY9 1227 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 CPNE9Q8IYJ1 553 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 CYP2W1Q8TAV3 490 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 GDPD5Q8WTR4 605 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 CHPT1Q8WUD6 406 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 CLPTM1LQ96KA5 538 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 PRMT6Q96LA8 375 aaPredicted RBP11.24□□□□□ -0.61
CLK3-226ENST00000569406 CSRNP1Q96S65 589 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 UNKQ9C0B0 810 aaKnown RBP11.24□□□□□ -0.61
CLK3-226ENST00000569406 EPB41L4BQ9H329 900 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 POLHQ9Y253 713 aa11.24□□□□□ -0.61
CLK3-226ENST00000569406 E9PMD0 336 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 TLR2O60603 784 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms