RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 MAGEC2Q9UBF1 373 aaPredicted RBP14.73□□□□□ -0.05
CLN3-235ENST00000568497 MSRB2Q9Y3D2 182 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.73□□□□□ -0.05
CLN3-235ENST00000568497 LAMA1P25391 3075 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 EML5Q05BV3 1969 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 DMXL2Q8TDJ6 3036 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 SYCE3A1L190 88 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 F8VP50 259 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 RHOBTB1O94844 696 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 AFPP02771 609 aaKnown RBP14.72□□□□□ -0.05
CLN3-235ENST00000568497 PNMA6AP0CW24 399 aaPredicted RBP14.72□□□□□ -0.05
CLN3-235ENST00000568497 HMGA1P17096 107 aaKnown RBP14.72□□□□□ -0.05
CLN3-235ENST00000568497 SLC9A1P19634 815 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 PAX3P23760 479 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 GABRR2P28476 465 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 GRIK1P39086 918 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 KLK7P49862 253 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 ANO6Q4KMQ2 910 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 PROSER1Q86XN7 944 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 FUKQ8N0W3 1084 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 TTC16Q8NEE8 873 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 SLC2A14Q8TDB8 520 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 RSPRY1Q96DX4 576 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 ZFYVE19Q96K21 471 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 GTPBP4Q9BZE4 634 aaKnown RBP14.72□□□□□ -0.05
CLN3-235ENST00000568497 INTS2Q9H0H0 1204 aaKnown RBP14.72□□□□□ -0.05
CLN3-235ENST00000568497 DUSP15Q9H1R2 295 aaPredicted RBP14.72□□□□□ -0.05
CLN3-235ENST00000568497 IL21Q9HBE4 155 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 METTL14Q9HCE5 456 aaKnown RBP14.72□□□□□ -0.05
CLN3-235ENST00000568497 ACP6Q9NPH0 428 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 CISHQ9NSE2 258 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 FANCLQ9NW38 375 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 NFE2L3Q9Y4A8 694 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 MYH10P35580 1976 aa14.72□□□□□ -0.05
CLN3-235ENST00000568497 BCLAF3A2AJT9 711 aaKnown RBP14.71□□□□□ -0.05
CLN3-235ENST00000568497 RNF225M0QZC1 329 aaPredicted RBP14.71□□□□□ -0.05
CLN3-235ENST00000568497 DPYSL4O14531 572 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 KHNYNO15037 678 aaKnown RBP14.71□□□□□ -0.05
CLN3-235ENST00000568497 DCLK1O15075 740 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 TADA3O75528 432 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 PGFP49763 221 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 EPHA5P54756 1037 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 MCCD1P59942 119 aaPredicted RBP14.71□□□□□ -0.05
CLN3-235ENST00000568497 FCHO2Q0JRZ9 810 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 CUL2Q13617 745 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 STX1AQ16623 288 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 COL28A1Q2UY09 1125 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 TMEM150AQ86TG1 271 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 FAM35AQ86V20 835 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 AOPEPQ8N6M6 819 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 SPPL2BQ8TCT7 592 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 KREMEN1Q96MU8 473 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 HHIPQ96QV1 700 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 IMPG2Q9BZV3 1241 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 ATXN3LQ9H3M9 355 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 SLC32A1Q9H598 525 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 KRT82Q9NSB4 513 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 GPSM3Q9Y4H4 160 aa14.71□□□□□ -0.05
CLN3-235ENST00000568497 ATG2BQ96BY7 2078 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 KCNJ18B7U540 433 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 PES1O00541 588 aaKnown RBP14.7□□□□□ -0.06
CLN3-235ENST00000568497 SCAMP3O14828 347 aaKnown RBP14.7□□□□□ -0.06
CLN3-235ENST00000568497 ATG13O75143 517 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 CILPO75339 1184 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 PRKCSHP14314 528 aaPredicted RBP14.7□□□□□ -0.06
CLN3-235ENST00000568497 RAD23BP54727 409 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 MAP3K7CLP57077 242 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 KCNJ12Q14500 433 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 NFE2Q16621 373 aaPredicted RBP14.7□□□□□ -0.06
CLN3-235ENST00000568497 MIIPQ5JXC2 388 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 GPRIN1Q7Z2K8 1008 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 PPM1KQ8N3J5 372 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 SLC4A11Q8NBS3 891 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 EHBP1Q8NDI1 1231 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 ZMIZ2Q8NF64 920 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 SCAMP5Q8TAC9 235 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 TAF4BQ92750 862 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 PSMG2Q969U7 264 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 SMOQ99835 787 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 OXCT2Q9BYC2 517 aaPredicted RBP14.7□□□□□ -0.06
CLN3-235ENST00000568497 VPS16Q9H269 839 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 GCNT4Q9P109 453 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 COQ4Q9Y3A0 265 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 NUP205Q92621 2012 aa14.7□□□□□ -0.06
CLN3-235ENST00000568497 KIF26AQ9ULI4 1882 aaPredicted RBP14.69□□□□□ -0.06
CLN3-235ENST00000568497 LOC400499M0QZD8 3231 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 TULP2O00295 520 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 STX10O60499 249 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 AP1G2O75843 785 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 GNA14O95837 355 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 P4HA1P13674 534 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 ERCC5P28715 1186 aaPredicted RBP14.69□□□□□ -0.06
CLN3-235ENST00000568497 TUFMP49411 452 aaKnown RBP14.69□□□□□ -0.06
CLN3-235ENST00000568497 MARSP56192 900 aaKnown RBP14.69□□□□□ -0.06
CLN3-235ENST00000568497 SIM1P81133 766 aaPredicted RBP14.69□□□□□ -0.06
CLN3-235ENST00000568497 INCA1Q0VD86 236 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 NCAPHQ15003 741 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 TAF12Q16514 161 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 ARHGAP44Q17R89 818 aa14.69□□□□□ -0.06
CLN3-235ENST00000568497 ARHGAP29Q52LW3 1261 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms