RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 KLHL13Q9P2N7 655 aa3.51□□□□□ -1.85
VPS35-207ENST00000568191 TRIM43BA6NCK2 446 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 TMEM233B4DJY2 109 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 EXOC5O00471 708 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 FCHO1O14526 889 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 INSIG1O15503 277 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 PRPF3O43395 683 aaKnown RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 PGDP52209 483 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 RPS13P62277 151 aaKnown RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 TXNL4AP83876 142 aaKnown RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 ID2Q02363 134 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 STK3Q13188 491 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 KCNB1Q14721 858 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 LARS2Q15031 903 aaKnown RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 LRRC41Q15345 812 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 CNN3Q15417 329 aaKnown RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 CNGA2Q16280 664 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 PFKFB3Q16875 520 aaPredicted RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 ZNF260Q3ZCT1 412 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 AWAT2Q6E213 333 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 DARS2Q6PI48 645 aaKnown RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 RANBP10Q6VN20 620 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 OVCH2Q7RTZ1 564 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 SRGAP1Q7Z6B7 1085 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 RAVER1Q8IY67 606 aaKnown RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 FAM71DQ8N9W8 422 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 TRIM43Q96BQ3 446 aaPredicted RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 NMD3Q96D46 503 aaKnown RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 CINPQ9BW66 212 aaPredicted RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 RTFDC1Q9BY42 306 aaPredicted RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 SPRTNQ9H040 489 aaPredicted RBP3.5□□□□□ -1.85
VPS35-207ENST00000568191 STEAP1Q9UHE8 339 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 ITGB1BP2Q9UKP3 347 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 L1RE1Q9UN81 338 aa3.5□□□□□ -1.85
VPS35-207ENST00000568191 FER1L4A9Z1Z3 1794 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 A8MVJ9 347 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 H7C4K7 107 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 RAB27BO00194 218 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 TBX3O15119 743 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 KCNAB3O43448 404 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 RRP9O43818 475 aaKnown RBP3.49□□□□□ -1.85
VPS35-207ENST00000568191 MAP4K4O95819 1239 aaPredicted RBP3.49□□□□□ -1.85
VPS35-207ENST00000568191 S100BP04271 92 aaPredicted RBP3.49□□□□□ -1.85
VPS35-207ENST00000568191 RPL17P18621 184 aaKnown RBP3.49□□□□□ -1.85
VPS35-207ENST00000568191 ACVR2AP27037 513 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 TACR3P29371 465 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 DIO1P49895 249 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 CPT1AP50416 773 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 HSF1Q00613 529 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 PSG6Q00889 435 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 TIAL1Q01085 375 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS35-207ENST00000568191 CFHR3Q02985 330 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 ZNF91Q05481 1191 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 PPP2R5AQ15172 486 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 FAM110CQ1W6H9 321 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 Q4G0T1 1027 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 FAM102BQ5T8I3 360 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 CCDC149Q6ZUS6 474 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 PIM3Q86V86 326 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 ANKRD13BQ86YJ7 626 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 LIX1LQ8IVB5 337 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 KIAA0319LQ8IZA0 1049 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 C12orf76Q8N812 135 aaPredicted RBP3.49□□□□□ -1.85
VPS35-207ENST00000568191 OR56A3Q8NH54 315 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 MAFAQ8NHW3 353 aaPredicted RBP3.49□□□□□ -1.85
VPS35-207ENST00000568191 ZNF398Q8TD17 642 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 HIC2Q96JB3 615 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 HIST1H2AAQ96QV6 131 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 WACQ9BTA9 647 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 POT1Q9NUX5 634 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 GAR1Q9NY12 217 aaKnown RBP3.49□□□□□ -1.85
VPS35-207ENST00000568191 DNMT3BQ9UBC3 853 aaKnown RBP3.49□□□□□ -1.85
VPS35-207ENST00000568191 CPNE7Q9UBL6 633 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 NOB1Q9ULX3 412 aaKnown RBP3.49□□□□□ -1.85
VPS35-207ENST00000568191 AFG3L2Q9Y4W6 797 aa3.49□□□□□ -1.85
VPS35-207ENST00000568191 USP19O94966 1318 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 H3BNC9 293 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 CLIC1O00299 241 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 GOLIM4O00461 696 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 CBSLP0DN79 551 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 MYBP10242 640 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 SFPQP23246 707 aaKnown RBP eCLIP3.48□□□□□ -1.85
VPS35-207ENST00000568191 ADRA1DP25100 572 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 TKTP29401 623 aaKnown RBP3.48□□□□□ -1.85
VPS35-207ENST00000568191 CBSP35520 551 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 KCNJ4P48050 445 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 ME1P48163 572 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 ITGA8P53708 1063 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 FOXG1P55316 489 aaPredicted RBP3.48□□□□□ -1.85
VPS35-207ENST00000568191 POLD3Q15054 466 aaPredicted RBP3.48□□□□□ -1.85
VPS35-207ENST00000568191 RBMS2Q15434 407 aaKnown RBP3.48□□□□□ -1.85
VPS35-207ENST00000568191 ZNF750Q32MQ0 723 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 SLC9C1Q4G0N8 1177 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 C10orf25Q5T742 122 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 RNF220Q5VTB9 566 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 ZDHHC24Q6UX98 284 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 MICU3Q86XE3 530 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 PNPLA1Q8N8W4 532 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 LRTOMTQ8WZ04 291 aa3.48□□□□□ -1.85
VPS35-207ENST00000568191 RUNDC1Q96C34 613 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms