RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RIBC1Q8N443 379 aaPredicted RBP21.15■□□□□ 0.98
CLN3-230ENST00000568076 ANKRD42Q8N9B4 389 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 ZFP42Q96MM3 310 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 TBCBQ99426 244 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 PHACTR1Q9C0D0 580 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 MLXIPLQ9NP71 852 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 ZMYND8Q9ULU4 1186 aaPredicted RBP21.15■□□□□ 0.98
CLN3-230ENST00000568076 E7ESA3 106 aa21.14■□□□□ 0.98
CLN3-230ENST00000568076 MDM4O15151 490 aa21.14■□□□□ 0.98
CLN3-230ENST00000568076 KIAA0754O94854 1291 aa21.14■□□□□ 0.98
CLN3-230ENST00000568076 STIP1P31948 543 aaKnown RBP21.14■□□□□ 0.98
CLN3-230ENST00000568076 PTPN9P43378 593 aa21.14■□□□□ 0.98
CLN3-230ENST00000568076 MTM1Q13496 603 aa21.14■□□□□ 0.98
CLN3-230ENST00000568076 SLC9A4Q6AI14 798 aa21.14■□□□□ 0.98
CLN3-230ENST00000568076 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.14■□□□□ 0.98
CLN3-230ENST00000568076 SOCS4Q8WXH5 440 aa21.14■□□□□ 0.98
CLN3-230ENST00000568076 CENPIQ92674 756 aaPredicted RBP21.14■□□□□ 0.98
CLN3-230ENST00000568076 USP29Q9HBJ7 922 aa21.14■□□□□ 0.98
CLN3-230ENST00000568076 ACTL7BQ9Y614 415 aa21.14■□□□□ 0.98
CLN3-230ENST00000568076 MEIS3P2A8K0S8 358 aa21.14■□□□□ 0.97
CLN3-230ENST00000568076 POC1B-GALNT4F8VUJ3 575 aa21.14■□□□□ 0.97
CLN3-230ENST00000568076 TNPO2O14787 897 aaKnown RBP21.14■□□□□ 0.97
CLN3-230ENST00000568076 GNAT1P11488 350 aa21.14■□□□□ 0.97
CLN3-230ENST00000568076 BASP1P80723 227 aaKnown RBP21.14■□□□□ 0.97
CLN3-230ENST00000568076 ADCY1Q08828 1119 aa21.14■□□□□ 0.97
CLN3-230ENST00000568076 OTUD6BQ8N6M0 293 aa21.14■□□□□ 0.97
CLN3-230ENST00000568076 FAF2Q96CS3 445 aa21.14■□□□□ 0.97
CLN3-230ENST00000568076 MAGEB5Q9BZ81 275 aa21.14■□□□□ 0.97
CLN3-230ENST00000568076 XPO7Q9UIA9 1087 aaKnown RBP21.14■□□□□ 0.97
CLN3-230ENST00000568076 DNAH12Q6ZR08 3092 aa21.14■□□□□ 0.97
CLN3-230ENST00000568076 RASA4BC9J798 803 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 H7C0C1 242 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 APOL1O14791 398 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 RASA4O43374 803 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 ATP2C2O75185 946 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 C6orf222P0C671 652 aaPredicted RBP21.13■□□□□ 0.97
CLN3-230ENST00000568076 AKR1A1P14550 325 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 LRPAP1P30533 357 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 ATP5OP48047 213 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 LIG3P49916 1009 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 PIGWQ7Z7B1 504 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 TRABD2AQ86V40 505 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 VSIG1Q86XK7 387 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 CABS1Q96KC9 395 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 PPP1R10Q96QC0 940 aaKnown RBP21.13■□□□□ 0.97
CLN3-230ENST00000568076 RASSF4Q9H2L5 321 aa21.13■□□□□ 0.97
CLN3-230ENST00000568076 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.12■□□□□ 0.97
CLN3-230ENST00000568076 HUS1O60921 280 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 MAP3K6O95382 1288 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 TGM2P21980 687 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 WARSP23381 471 aaKnown RBP21.12■□□□□ 0.97
CLN3-230ENST00000568076 SSTR1P30872 391 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 SCNN1AP37088 669 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 TAF2Q6P1X5 1199 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 ARCQ7LC44 396 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 B3GALNT2Q8NCR0 500 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 PYROXD1Q8WU10 500 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 WNT8BQ93098 351 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 HSFY1Q96LI6 401 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 ZNF670Q9BS34 389 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 CYLDQ9NQC7 956 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 CACNG4Q9UBN1 327 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 HEY1Q9Y5J3 304 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 VIMP08670 466 aaKnown RBP21.12■□□□□ 0.97
CLN3-230ENST00000568076 L1CAMP32004 1257 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 BCAR1P56945 870 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 PPP6R3Q5H9R7 873 aaPredicted RBP21.12■□□□□ 0.97
CLN3-230ENST00000568076 RNF187Q5TA31 235 aaPredicted RBP21.12■□□□□ 0.97
CLN3-230ENST00000568076 RGMBQ6NW40 437 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 SAPCD2Q86UD0 394 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 TOP6BLQ8N6T0 577 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 FBXO36Q8NEA4 188 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 LRRN4Q8WUT4 740 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 DYDC1Q8WWB3 177 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 MTMR10Q9NXD2 777 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 RABGEF1Q9UJ41 708 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 CDY2AQ9Y6F7 541 aa21.12■□□□□ 0.97
CLN3-230ENST00000568076 SMAPO00193 183 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 DUSP11O75319 330 aaKnown RBP21.11■□□□□ 0.97
CLN3-230ENST00000568076 RBL1P28749 1068 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 ACADSBP45954 432 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 MRPS6P82932 125 aaKnown RBP21.11■□□□□ 0.97
CLN3-230ENST00000568076 SF3A3Q12874 501 aaKnown RBP eCLIP21.11■□□□□ 0.97
CLN3-230ENST00000568076 CRHR2Q13324 411 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 KCNJ11Q14654 390 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 EFTUD2Q15029 972 aaKnown RBP eCLIP21.11■□□□□ 0.973e-6■■■■□ 22
CLN3-230ENST00000568076 PKN2Q16513 984 aaKnown RBP21.11■□□□□ 0.97
CLN3-230ENST00000568076 DPYSL2Q16555 572 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 EFHC2Q5JST6 749 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 FUKQ8N0W3 1084 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 GSTCDQ8NEC7 633 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 CKAP2Q8WWK9 683 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 RTP4Q96DX8 246 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 TNIP3Q96KP6 325 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 OSBPL7Q9BZF2 842 aa21.11■□□□□ 0.97
CLN3-230ENST00000568076 XPO1O14980 1071 aaKnown RBP21.1■□□□□ 0.97
CLN3-230ENST00000568076 DESP17661 470 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 ACAT1P24752 427 aaKnown RBP21.1■□□□□ 0.97
CLN3-230ENST00000568076 RDXP35241 583 aaKnown RBP21.1■□□□□ 0.97
CLN3-230ENST00000568076 AFF1P51825 1210 aaKnown RBP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms