RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 DENND1BQ6P3S1 775 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 FBXL6Q8N531 539 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 SH3RF2Q8TEC5 729 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 ZNF606Q8WXB4 792 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 NDRG1Q92597 394 aaKnown RBP10.32□□□□□ -0.76
CLK3-220ENST00000567992 IRF7Q92985 503 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 PBXIP1Q96AQ6 731 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 CHFRQ96EP1 664 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 ERGIC2Q96RQ1 377 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 ULBP1Q9BZM6 244 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 HPS4Q9NQG7 708 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 TLR8Q9NR97 1041 aaKnown RBP10.32□□□□□ -0.76
CLK3-220ENST00000567992 HEBP1Q9NRV9 189 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.32□□□□□ -0.76
CLK3-220ENST00000567992 HESX1Q9UBX0 185 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 CYTH4Q9UIA0 394 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 CPQQ9Y646 472 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 MYO15AQ9UKN7 3530 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 F5P12259 2224 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 KIAA1549LQ6ZVL6 1849 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 OTOL1A6NHN0 477 aaPredicted RBP10.31□□□□□ -0.76
CLK3-220ENST00000567992 SMTNL1A8MU46 457 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 F8VZ95 297 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 LEFTY2O00292 366 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 DPYSL4O14531 572 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 ZNF263O14978 683 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 TEX33O43247 280 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 GREM1O60565 184 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 TLR5O60602 858 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 TBX18O95935 607 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 USP8P40818 1118 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 RGS7P49802 495 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 SLC8A3P57103 927 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 PRKCQQ04759 706 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 TNK2Q07912 1038 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 RAPGEF1Q13905 1077 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 FKBP15Q5T1M5 1219 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 TRIM68Q6AZZ1 485 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 LUZP1Q86V48 1076 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 SLC47A2Q86VL8 602 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 ZNF687Q8N1G0 1237 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 SCML4Q8N228 414 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 ZNF276Q8N554 614 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 WDTC1Q8N5D0 677 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 TMEM105Q8N8V8 129 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 ANKRD20A12PQ8NF67 263 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 WBP2Q969T9 261 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 STK33Q9BYT3 514 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 TBC1D17Q9HA65 648 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 FAM207AQ9NSI2 230 aaPredicted RBP10.31□□□□□ -0.76
CLK3-220ENST00000567992 SMPD4Q9NXE4 827 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 GTSE1Q9NYZ3 720 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 CLIC5Q9NZA1 410 aa10.31□□□□□ -0.76
CLK3-220ENST00000567992 A0A1B0GTH6 734 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 YJEFN3A6XGL0 299 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 E7ENQ6 273 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 PIK3R2O00459 728 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 MDM4O15151 490 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 THAP12O43422 761 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 PI15O43692 258 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 ZBED1O96006 694 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 TPM2P07951 284 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 MBL2P11226 248 aaPredicted RBP10.3□□□□□ -0.76
CLK3-220ENST00000567992 RARGP13631 454 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 ARSAP15289 507 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 AOC1P19801 751 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 CDK11BP21127 795 aaKnown RBP10.3□□□□□ -0.76
CLK3-220ENST00000567992 SOX9P48436 509 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 PSEN1P49768 467 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 MLLT6P55198 1093 aaPredicted RBP10.3□□□□□ -0.76
CLK3-220ENST00000567992 DAOAP59103 153 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 POLR2FP61218 127 aaKnown RBP10.3□□□□□ -0.76
CLK3-220ENST00000567992 PLCB2Q00722 1185 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 UBXN1Q04323 297 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 EML3Q32P44 896 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 KLHDC10Q6PID8 442 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 TXNDC11Q6PKC3 985 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 TPRG1Q6ZUI0 275 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 YAF2Q8IY57 180 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 KIAA1958Q8N8K9 716 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 CLEC4CQ8WTT0 213 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 OSCP1Q8WVF1 389 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 DDX1Q92499 740 aaKnown RBP10.3□□□□□ -0.76
CLK3-220ENST00000567992 HSFY1Q96LI6 401 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 NAP1L5Q96NT1 182 aaPredicted RBP10.3□□□□□ -0.76
CLK3-220ENST00000567992 KLF16Q9BXK1 252 aaPredicted RBP10.3□□□□□ -0.76
CLK3-220ENST00000567992 SLC4A5Q9BY07 1137 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 FOXQ1Q9C009 403 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 EBF3Q9H4W6 596 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 LRRC4Q9HBW1 653 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 RTN4Q9NQC3 1192 aaKnown RBP10.3□□□□□ -0.76
CLK3-220ENST00000567992 CNGB3Q9NQW8 809 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 CFAP97Q9P2B7 532 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 NAGPAQ9UK23 515 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 NUDT5Q9UKK9 219 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 PCDHGC3Q9UN70 934 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 MTF2Q9Y483 593 aaPredicted RBP10.3□□□□□ -0.76
CLK3-220ENST00000567992 WNT6Q9Y6F9 365 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 PIAS3Q9Y6X2 628 aa10.3□□□□□ -0.76
CLK3-220ENST00000567992 SCAMP3O14828 347 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms