RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 GCNT1Q02742 428 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 GPRIN1Q7Z2K8 1008 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 ARHGAP18Q8N392 663 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 PPM1KQ8N3J5 372 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 UBR7Q8N806 425 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 ZBTB44Q8NCP5 570 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 EHBP1Q8NDI1 1231 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 LMO3Q8TAP4 145 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 CD101Q93033 1021 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 JAKMIP2Q96AA8 810 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 GBP4Q96PP9 640 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 NUP62CLQ9H1M0 184 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 CLIC5Q9NZA1 410 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 DACH1Q9UI36 760 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 SH3BP1Q9Y3L3 701 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 R4GN57 208 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 GREB1Q4ZG55 1949 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 MIA3Q5JRA6 1907 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 CYP26A1O43174 497 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 ADH1CP00326 375 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 RALAP11233 206 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 CD19P15391 556 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 HOXA6P31267 233 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 BCAT1P54687 386 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 GAS6Q14393 721 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 FSTL4Q6MZW2 842 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 ASCL5Q7RTU5 278 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 CHFRQ96EP1 664 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 ZFRQ96KR1 1074 aaKnown RBP19.71■□□□□ 0.75
CLN3-227ENST00000567495 DNMT3LQ9UJW3 386 aa19.71■□□□□ 0.75
CLN3-227ENST00000567495 DHCR24Q15392 516 aa19.7■□□□□ 0.74
CLN3-227ENST00000567495 STILQ15468 1287 aa19.7■□□□□ 0.74
CLN3-227ENST00000567495 CT47A1Q5JQC4 288 aaPredicted RBP19.7■□□□□ 0.74
CLN3-227ENST00000567495 TMEM270Q6UE05 265 aa19.7■□□□□ 0.74
CLN3-227ENST00000567495 Q6ZS52 159 aa19.7■□□□□ 0.74
CLN3-227ENST00000567495 PIGZQ86VD9 579 aa19.7■□□□□ 0.74
CLN3-227ENST00000567495 FAM81BQ96LP2 452 aa19.7■□□□□ 0.74
CLN3-227ENST00000567495 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.7■□□□□ 0.74
CLN3-227ENST00000567495 NAGPAQ9UK23 515 aa19.7■□□□□ 0.74
CLN3-227ENST00000567495 OBSL1O75147 1896 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 A0A1W2PQH9 124 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 XPO1O14980 1071 aaKnown RBP19.69■□□□□ 0.74
CLN3-227ENST00000567495 CYP17A1P05093 508 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 SETSIPP0DME0 302 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 TDGF1P13385 188 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 RARGP13631 454 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 PRKCSHP14314 528 aaPredicted RBP19.69■□□□□ 0.74
CLN3-227ENST00000567495 ERCC5P28715 1186 aaPredicted RBP19.69■□□□□ 0.74
CLN3-227ENST00000567495 EIF2DP41214 584 aaKnown RBP19.69■□□□□ 0.74
CLN3-227ENST00000567495 PLA2G4AP47712 749 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 PGFP49763 221 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 SATB1Q01826 763 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 BST2Q10589 180 aaKnown RBP19.69■□□□□ 0.74
CLN3-227ENST00000567495 GOLGA7BQ2TAP0 167 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 RAB41Q5JT25 222 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 SMYD5Q6GMV2 418 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 LCLAT1Q6UWP7 414 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 HTR3DQ70Z44 454 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 TTC30AQ86WT1 665 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 CNOT6LQ96LI5 555 aaKnown RBP19.69■□□□□ 0.74
CLN3-227ENST00000567495 INTS2Q9H0H0 1204 aaKnown RBP19.69■□□□□ 0.74
CLN3-227ENST00000567495 LSM7Q9UK45 103 aaKnown RBP19.69■□□□□ 0.74
CLN3-227ENST00000567495 TSPAN16Q9UKR8 245 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 PCDHB4Q9Y5E5 795 aa19.69■□□□□ 0.74
CLN3-227ENST00000567495 FAM186AA6NE01 2351 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 CHURC1-FNTBB4DL54 471 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 GOLGA6L22H0YM25 854 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 O00370 1275 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 LILRB5O75023 590 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 CNGA2Q16280 664 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 TPD52L1Q16890 204 aaPredicted RBP19.68■□□□□ 0.74
CLN3-227ENST00000567495 C10orf120Q5SQS8 335 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 PM20D1Q6GTS8 502 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 TSSK4Q6SA08 328 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 ENOSF1Q7L5Y1 443 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 SCD5Q86SK9 330 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 FAM114A1Q8IWE2 563 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 KLF16Q9BXK1 252 aaPredicted RBP19.68■□□□□ 0.74
CLN3-227ENST00000567495 THAP9Q9H5L6 903 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 NMUR1Q9HB89 426 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 LRRC4Q9HBW1 653 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 FBRSL1Q9HCM7 1045 aaKnown RBP19.68■□□□□ 0.74
CLN3-227ENST00000567495 LMBRD1Q9NUN5 540 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 OSER1Q9NX31 292 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 KIF26AQ9ULI4 1882 aaPredicted RBP19.68■□□□□ 0.74
CLN3-227ENST00000567495 ANAPC1Q9H1A4 1944 aa19.68■□□□□ 0.74
CLN3-227ENST00000567495 ZNF638Q14966 1978 aaKnown RBP19.67■□□□□ 0.74
CLN3-227ENST00000567495 GTPBP10A4D1E9 387 aaKnown RBP19.67■□□□□ 0.74
CLN3-227ENST00000567495 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.67■□□□□ 0.74
CLN3-227ENST00000567495 TBX18O95935 607 aa19.67■□□□□ 0.74
CLN3-227ENST00000567495 ZBED1O96006 694 aa19.67■□□□□ 0.74
CLN3-227ENST00000567495 EGFP01133 1207 aa19.67■□□□□ 0.74
CLN3-227ENST00000567495 ADH5P11766 374 aa19.67■□□□□ 0.74
CLN3-227ENST00000567495 TKTL1P51854 596 aa19.67■□□□□ 0.74
CLN3-227ENST00000567495 PDE4CQ08493 712 aa19.67■□□□□ 0.74
CLN3-227ENST00000567495 PREPLQ4J6C6 727 aaPredicted RBP19.67■□□□□ 0.74
CLN3-227ENST00000567495 RHBDF2Q6PJF5 856 aa19.67■□□□□ 0.74
CLN3-227ENST00000567495 RRAGAQ7L523 313 aa19.67■□□□□ 0.74
CLN3-227ENST00000567495 CREBRFQ8IUR6 639 aa19.67■□□□□ 0.74
CLN3-227ENST00000567495 KCTD13Q8WZ19 329 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms