RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 NAT8LQ8N9F0 302 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 PRPF31Q8WWY3 499 aaKnown RBP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 CPT1BQ92523 772 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 PAFAH2Q99487 392 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 TARS2Q9BW92 718 aaKnown RBP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 ADAM33Q9BZ11 813 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 DCLRE1BQ9H816 532 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 LRRIQ4A6NIV6 560 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 CCDC22O60826 627 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 BANF1O75531 89 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 C22orf31O95567 290 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 PGK1P00558 417 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 F2P00734 622 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 ASS1P00966 412 aaKnown RBP13.8□□□□□ -0.2
VPS4A-204ENST00000566354 C6orf222P0C671 652 aaPredicted RBP13.8□□□□□ -0.2
VPS4A-204ENST00000566354 TSHRP16473 764 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 CPT1AP50416 773 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 CAPSQ13938 189 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 FSCN1Q16658 493 aaKnown RBP13.8□□□□□ -0.2
VPS4A-204ENST00000566354 EFCAB12Q6NXP0 572 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 DNAJC14Q6Y2X3 702 aaPredicted RBP13.8□□□□□ -0.2
VPS4A-204ENST00000566354 TRIM74Q86UV6 250 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 TRIM73Q86UV7 250 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 BANPQ8N9N5 519 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 ACTL9Q8TC94 416 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 RAET1EQ8TD07 263 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 TCP10LQ8TDR4 215 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 MZB1Q8WU39 189 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 ACSF2Q96CM8 615 aaPredicted RBP13.8□□□□□ -0.2
VPS4A-204ENST00000566354 ZNF668Q96K58 619 aaPredicted RBP13.8□□□□□ -0.2
VPS4A-204ENST00000566354 DENND2DQ9H6A0 471 aaPredicted RBP13.8□□□□□ -0.2
VPS4A-204ENST00000566354 MANSC1Q9H8J5 431 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 Q9Y3F1 56 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 PPME1Q9Y570 386 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 C3orf70A6NLC5 250 aaPredicted RBP13.8□□□□□ -0.2
VPS4A-204ENST00000566354 SEPT4O43236 478 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 SKAP2O75563 359 aaPredicted RBP13.8□□□□□ -0.2
VPS4A-204ENST00000566354 MYL3P08590 195 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 ATP6V1C1P21283 382 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 CDC25CP30307 473 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 ABL2P42684 1182 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 ZNF484Q5JVG2 852 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 FNBP1LQ5T0N5 605 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 RHPN2Q8IUC4 686 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 PALM2Q8IXS6 379 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 TRIM55Q9BYV6 548 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 SAGE1Q9NXZ1 904 aa13.8□□□□□ -0.2
VPS4A-204ENST00000566354 TRIP12Q14669 1992 aaPredicted RBP13.79□□□□□ -0.2
VPS4A-204ENST00000566354 A6NHS1 94 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 KRT7P08729 469 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 CDH5P33151 784 aaPredicted RBP13.79□□□□□ -0.2
VPS4A-204ENST00000566354 PTDSS1P48651 473 aaKnown RBP13.79□□□□□ -0.2
VPS4A-204ENST00000566354 OTUD4Q01804 1114 aaKnown RBP13.79□□□□□ -0.2
VPS4A-204ENST00000566354 EFTUD2Q15029 972 aaKnown RBP eCLIP13.79□□□□□ -0.2
VPS4A-204ENST00000566354 GRIK4Q16099 956 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 MSS51Q4VC12 460 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 IER5Q5VY09 327 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 ANKRD22Q5VYY1 191 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 BBS12Q6ZW61 710 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 PDIK1LQ8N165 341 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 FBXO36Q8NEA4 188 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 DCAKDQ8WVC6 231 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 RSAD2Q8WXG1 361 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 SETD4Q9NVD3 440 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 DCTN4Q9UJW0 460 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 STRIP2Q9ULQ0 834 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 PCDHGC3Q9UN70 934 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 PCDHGA4Q9Y5G9 962 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 WDR91A4D1P6 747 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 CST8O60676 142 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 ENTPD5O75356 428 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 CST3P01034 146 aaPredicted RBP13.79□□□□□ -0.2
VPS4A-204ENST00000566354 RPL22P35268 128 aaKnown RBP13.79□□□□□ -0.2
VPS4A-204ENST00000566354 GAD2Q05329 585 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 LAMTOR4Q0VGL1 99 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 MARCH8Q5T0T0 291 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 C4orf50Q6ZRC1 276 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 LMNTD2Q8IXW0 634 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 THNSL1Q8IYQ7 743 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 WDTC1Q8N5D0 677 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 BTBD10Q9BSF8 475 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 FAM167BQ9BTA0 163 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 TMEM134Q9H6X4 195 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 SLC24A3Q9HC58 644 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 KANSL3Q9P2N6 904 aa13.79□□□□□ -0.2
VPS4A-204ENST00000566354 SAE1Q9UBE0 346 aaPredicted RBP13.79□□□□□ -0.2
VPS4A-204ENST00000566354 DNAJC6O75061 913 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 TGDSO95455 350 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 HMGCRP04035 888 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 SRGAP2CP0DJJ0 459 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 GDF10P55107 478 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 GJA9P57773 515 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 HADHQ16836 314 aaKnown RBP13.78□□□□□ -0.2
VPS4A-204ENST00000566354 TSNAXIP1Q2TAA8 658 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 GNASQ5JWF2 1037 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 TRIM68Q6AZZ1 485 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 SMYD5Q6GMV2 418 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 WDR49Q8IV35 697 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 RFWD2Q8NHY2 731 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 CYTH2Q99418 400 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms