RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 DAAM1Q9Y4D1 1078 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 M0QYV0 167 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 THAP12O43422 761 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 BEST1O76090 585 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 YWHAQP27348 245 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 SLC5A3P53794 718 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 BCAT1P54687 386 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 POLR2FP61218 127 aaKnown RBP18.19■□□□□ 0.5
CLN3-217ENST00000565354 CYP4F8P98187 520 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 PTK2Q05397 1052 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 SPEM2Q0P670 501 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 DRAP1Q14919 205 aaPredicted RBP18.19■□□□□ 0.5
CLN3-217ENST00000565354 GPR158Q5T848 1215 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 LAIR1Q6GTX8 287 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 TANGO2Q6ICL3 276 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 MAMSTRQ6ZN01 415 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 APTXQ7Z2E3 356 aaKnown RBP18.19■□□□□ 0.5
CLN3-217ENST00000565354 ANKRD52Q8NB46 1076 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 NETO1Q8TDF5 533 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 FBXO32Q969P5 355 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 ELSPBP1Q96BH3 223 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 ERGIC2Q96RQ1 377 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 CHRDQ9H2X0 955 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 RTN4Q9NQC3 1192 aaKnown RBP18.19■□□□□ 0.5
CLN3-217ENST00000565354 TMEM30AQ9NV96 361 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 AJAP1Q9UKB5 411 aaPredicted RBP18.19■□□□□ 0.5
CLN3-217ENST00000565354 CNTN6Q9UQ52 1028 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 SIK3Q9Y2K2 1263 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.19■□□□□ 0.5
CLN3-217ENST00000565354 TICRRQ7Z2Z1 1910 aa18.19■□□□□ 0.5
CLN3-217ENST00000565354 COL4A2P08572 1712 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 O00370 1275 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 MAN2B1O00754 1011 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 SLC30A4O14863 429 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 TEX33O43247 280 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 LRP3O75074 770 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 ABL1P00519 1130 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 CALCAP01258 141 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 ZNF132P52740 706 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 UBASH3AP57075 661 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 BPIFB4P59827 614 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 BST2Q10589 180 aaKnown RBP18.18■□□□□ 0.5
CLN3-217ENST00000565354 PPP2R5DQ14738 602 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 CNGA2Q16280 664 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 LPAL2Q16609 132 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 PPM1JQ5JR12 505 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 POTEHQ6S545 545 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 GAREM2Q75VX8 874 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 CACNA2D4Q7Z3S7 1137 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 CELF5Q8N6W0 485 aaKnown RBP18.18■□□□□ 0.5
CLN3-217ENST00000565354 ZMIZ2Q8NF64 920 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 UBA3Q8TBC4 463 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 MYRFLQ96LU7 910 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 IER2Q9BTL4 223 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 STK33Q9BYT3 514 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 GANQ9H2C0 597 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 FBXO44Q9H4M3 255 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 IL21Q9HBE4 155 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 TRPC7Q9HCX4 862 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 PNPLA8Q9NP80 782 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 NLRC4Q9NPP4 1024 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 COMMD8Q9NX08 183 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 TRPM5Q9NZQ8 1165 aa18.18■□□□□ 0.5
CLN3-217ENST00000565354 NDRG2Q9UN36 371 aaKnown RBP18.18■□□□□ 0.5
CLN3-217ENST00000565354 A0A1B0GTH6 734 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 FOXN3O00409 490 aaPredicted RBP18.17■□□□□ 0.5
CLN3-217ENST00000565354 CYP26A1O43174 497 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 MOSPD3O75425 235 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 F11P03951 625 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 TPM3P06753 285 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 PNMA6AP0CW24 399 aaPredicted RBP18.17■□□□□ 0.5
CLN3-217ENST00000565354 SETSIPP0DME0 302 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 DDX6P26196 483 aaKnown RBP eCLIP18.17■□□□□ 0.5
CLN3-217ENST00000565354 USP46P62068 366 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 SMYD5Q6GMV2 418 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 LCLAT1Q6UWP7 414 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 TTC30AQ86WT1 665 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 PDZD8Q8NEN9 1154 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 TFAP2BQ92481 460 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 NAP1L5Q96NT1 182 aaPredicted RBP18.17■□□□□ 0.5
CLN3-217ENST00000565354 TTLL2Q9BWV7 592 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 PDCL3Q9H2J4 239 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 TASP1Q9H6P5 420 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 ZMYM5Q9UJ78 669 aa18.17■□□□□ 0.5
CLN3-217ENST00000565354 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.17■□□□□ 0.5
CLN3-217ENST00000565354 XPO1O14980 1071 aaKnown RBP18.16■□□□□ 0.5
CLN3-217ENST00000565354 RETP07949 1114 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 FCARP24071 287 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 PPP3CCP48454 512 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 PDE4CQ08493 712 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 TAF10Q12962 218 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 GRM2Q14416 872 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 DPY19L2P1Q6NXN4 242 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 SCAMP5Q8TAC9 235 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 ZSCAN18Q8TBC5 510 aaPredicted RBP18.16■□□□□ 0.5
CLN3-217ENST00000565354 ANP32EQ9BTT0 268 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 BRD9Q9H8M2 597 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 LRRC4Q9HBW1 653 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 CEP295Q9C0D2 2601 aa18.16■□□□□ 0.5
CLN3-217ENST00000565354 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms