RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 FAXDC2Q96IV6 333 aa23.74■■□□□ 1.39
CLN3-215ENST00000565236 ZFRQ96KR1 1074 aaKnown RBP23.74■■□□□ 1.39
CLN3-215ENST00000565236 HEXIM2Q96MH2 286 aaKnown RBP23.74■■□□□ 1.39
CLN3-215ENST00000565236 TLR5O60602 858 aa23.73■■□□□ 1.39
CLN3-215ENST00000565236 RPP40O75818 363 aaKnown RBP23.73■■□□□ 1.39
CLN3-215ENST00000565236 ACO1P21399 889 aaKnown RBP23.73■■□□□ 1.39
CLN3-215ENST00000565236 LMNB2Q03252 620 aa23.73■■□□□ 1.39
CLN3-215ENST00000565236 DMC1Q14565 340 aa23.73■■□□□ 1.39
CLN3-215ENST00000565236 RSPO4Q2I0M5 234 aaPredicted RBP23.73■■□□□ 1.39
CLN3-215ENST00000565236 ZNF394Q53GI3 561 aa23.73■■□□□ 1.39
CLN3-215ENST00000565236 DCAF17Q5H9S7 520 aaPredicted RBP23.73■■□□□ 1.39
CLN3-215ENST00000565236 FAM160A2Q8N612 972 aaPredicted RBP23.73■■□□□ 1.39
CLN3-215ENST00000565236 HHIPQ96QV1 700 aa23.73■■□□□ 1.39
CLN3-215ENST00000565236 PNKPQ96T60 521 aa23.73■■□□□ 1.39
CLN3-215ENST00000565236 PARD6AQ9NPB6 346 aa23.73■■□□□ 1.39
CLN3-215ENST00000565236 SCML2Q9UQR0 700 aa23.73■■□□□ 1.39
CLN3-215ENST00000565236 MYOFQ9NZM1 2061 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 PRR5-ARHGAP8B1AHC4 643 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 HHLA1C9JL84 531 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 K7EQS6 105 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 SLC16A3O15427 465 aaKnown RBP23.72■■□□□ 1.39
CLN3-215ENST00000565236 LRP3O75074 770 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 CCDC192P0DO97 292 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 ADH5P11766 374 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 SDHBP21912 280 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 SLC6A11P48066 632 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 PGFP49763 221 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 SEC13P55735 322 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 ARHGAP8P85298 464 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 LRRC63Q05C16 580 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 STIM1Q13586 685 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 C2orf27AQ580R0 203 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 PPP1R26Q5T8A7 1209 aaPredicted RBP23.72■■□□□ 1.39
CLN3-215ENST00000565236 GPRIN1Q7Z2K8 1008 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 USP33Q8TEY7 942 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 DUSP16Q9BY84 665 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 PNPLA8Q9NP80 782 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 CISHQ9NSE2 258 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 DLL3Q9NYJ7 618 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 SDK1Q7Z5N4 2213 aa23.72■■□□□ 1.39
CLN3-215ENST00000565236 AXIN1O15169 862 aa23.71■■□□□ 1.39
CLN3-215ENST00000565236 APBB3O95704 486 aa23.71■■□□□ 1.39
CLN3-215ENST00000565236 IRF1P10914 325 aa23.71■■□□□ 1.39
CLN3-215ENST00000565236 ATP5C1P36542 298 aaKnown RBP23.71■■□□□ 1.39
CLN3-215ENST00000565236 EIF2DP41214 584 aaKnown RBP23.71■■□□□ 1.39
CLN3-215ENST00000565236 PMS1P54277 932 aaKnown RBP23.71■■□□□ 1.39
CLN3-215ENST00000565236 GAD2Q05329 585 aa23.71■■□□□ 1.39
CLN3-215ENST00000565236 LY6G5CQ5SRR4 150 aa23.71■■□□□ 1.39
CLN3-215ENST00000565236 DGLUCYQ7Z3D6 616 aa23.71■■□□□ 1.39
CLN3-215ENST00000565236 CACNA2D4Q7Z3S7 1137 aa23.71■■□□□ 1.39
CLN3-215ENST00000565236 TATDN2Q93075 761 aa23.71■■□□□ 1.39
CLN3-215ENST00000565236 ARMCX3Q9UH62 379 aaPredicted RBP23.71■■□□□ 1.39
CLN3-215ENST00000565236 RALGAPA1Q6GYQ0 2036 aa23.71■■□□□ 1.39
CLN3-215ENST00000565236 CYP26A1O43174 497 aa23.7■■□□□ 1.38
CLN3-215ENST00000565236 TBX18O95935 607 aa23.7■■□□□ 1.38
CLN3-215ENST00000565236 APODP05090 189 aa23.7■■□□□ 1.38
CLN3-215ENST00000565236 BTBD8Q5XKL5 378 aa23.7■■□□□ 1.38
CLN3-215ENST00000565236 ISM2Q6H9L7 571 aa23.7■■□□□ 1.38
CLN3-215ENST00000565236 BBS7Q8IWZ6 715 aa23.7■■□□□ 1.38
CLN3-215ENST00000565236 ZC3H3Q8IXZ2 948 aaKnown RBP23.7■■□□□ 1.38
CLN3-215ENST00000565236 TMEM176AQ96HP8 235 aa23.7■■□□□ 1.38
CLN3-215ENST00000565236 FAM124BQ9H5Z6 455 aaPredicted RBP23.7■■□□□ 1.38
CLN3-215ENST00000565236 CYLDQ9NQC7 956 aa23.7■■□□□ 1.38
CLN3-215ENST00000565236 MYO16Q9Y6X6 1858 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 TRIM49BA6NDI0 452 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 PALM2-AKAP2B1ALY0 433 aaPredicted RBP23.69■■□□□ 1.38
CLN3-215ENST00000565236 PSMA7O14818 248 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 KAT7O95251 611 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 KIF11P52732 1056 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 MRPS21P82921 87 aaKnown RBP23.69■■□□□ 1.38
CLN3-215ENST00000565236 GOLGA8FQ08AF8 430 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 GOLGA8DPQ0D2H9 430 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 CBWD6Q4V339 395 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 CBWD3Q5JTY5 395 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 CBWD5Q5RIA9 395 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 HTR3DQ70Z44 454 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 ELOA2Q8IYF1 753 aaPredicted RBP23.69■■□□□ 1.38
CLN3-215ENST00000565236 SLC4A11Q8NBS3 891 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 WBP2Q969T9 261 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 ARID3AQ99856 593 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 DUSP9Q99956 384 aaKnown RBP23.69■■□□□ 1.38
CLN3-215ENST00000565236 KLF16Q9BXK1 252 aaPredicted RBP23.69■■□□□ 1.38
CLN3-215ENST00000565236 ARHGEF4Q9NR80 690 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 SPHK2Q9NRA0 654 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 SEMA4GQ9NTN9 838 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 OSER1Q9NX31 292 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 EBF1Q9UH73 591 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 COQ4Q9Y3A0 265 aa23.69■■□□□ 1.38
CLN3-215ENST00000565236 SPAG17Q6Q759 2223 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 A0A1W2PQH9 124 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 RARGP13631 454 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 GRIA2P42262 883 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 RAD23BP54727 409 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 KBTBD6Q86V97 674 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 C12orf40Q86WS4 652 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 CCDC33Q8N5R6 958 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 TSTD1Q8NFU3 115 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 DHTKD1Q96HY7 919 aaPredicted RBP23.68■■□□□ 1.38
CLN3-215ENST00000565236 NMUR1Q9HB89 426 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 NAGPAQ9UK23 515 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms