RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 FAM172AQ8WUF8 416 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 ITFG2Q969R8 447 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 SLC7A6OSQ96CW6 309 aaPredicted RBP14.05□□□□□ -0.16
CLK3-215ENST00000564353 KIF12Q96FN5 646 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 FAXDC2Q96IV6 333 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 MMP19Q99542 508 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 MRPL45Q9BRJ2 306 aaKnown RBP14.05□□□□□ -0.16
CLK3-215ENST00000564353 TMPRSS4Q9NRS4 437 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 PARP14Q460N5 1801 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 DOCK1Q14185 1865 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 FAM237BA0A1B0GVD1 139 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 CCNB1P14635 433 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 GPD1P21695 349 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 ADGRD1Q6QNK2 874 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 CYP4V2Q6ZWL3 525 aaPredicted RBP14.05□□□□□ -0.16
CLK3-215ENST00000564353 TDRPQ86YL5 185 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 FAM49AQ9H0Q0 323 aaPredicted RBP14.05□□□□□ -0.16
CLK3-215ENST00000564353 DPEP3Q9H4B8 488 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 PDZD7Q9H5P4 517 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 RBPJLQ9UBG7 517 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 SLC24A2Q9UI40 661 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 TRIM49D1C9J1S8 452 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 ALDH3A1P30838 453 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 KIZQ2M2Z5 673 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 TRMT10BQ6PF06 316 aaKnown RBP14.04□□□□□ -0.16
CLK3-215ENST00000564353 ZCCHC23Q6ZST2 131 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 SULF1Q8IWU6 871 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 BANPQ8N9N5 519 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 CMASQ8NFW8 434 aaPredicted RBP14.04□□□□□ -0.16
CLK3-215ENST00000564353 MZB1Q8WU39 189 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 FAM167AQ96KS9 214 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 BCO2Q9BYV7 579 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 FOXP3Q9BZS1 431 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 TXLNGQ9NUQ3 528 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 ARL8BQ9NVJ2 186 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.04□□□□□ -0.16
CLK3-215ENST00000564353 IGKV6-21A0A0C4DH24 114 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 KIF3CO14782 793 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 ADORA2BP29275 332 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 YARSP54577 528 aaKnown RBP14.04□□□□□ -0.16
CLK3-215ENST00000564353 ZNF200P98182 395 aaPredicted RBP14.04□□□□□ -0.16
CLK3-215ENST00000564353 GBE1Q04446 702 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 TMEM132DQ14C87 1099 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 CCDC14Q49A88 953 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 MROH9Q5TGP6 573 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 FYB2Q5VWT5 728 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 PCGF5Q86SE9 256 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 ALYREFQ86V81 257 aaKnown RBP14.04□□□□□ -0.16
CLK3-215ENST00000564353 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.04□□□□□ -0.16
CLK3-215ENST00000564353 C18orf25Q96B23 403 aaPredicted RBP14.04□□□□□ -0.16
CLK3-215ENST00000564353 GRAMD1AQ96CP6 724 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 ACAP3Q96P50 834 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 TSSK1BQ9BXA7 367 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 C2orf40Q9H1Z8 148 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 LHX5Q9H2C1 402 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 SMYD2Q9NRG4 433 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 ASNSD1Q9NWL6 643 aa14.04□□□□□ -0.16
CLK3-215ENST00000564353 NOP53Q9NZM5 478 aaKnown RBP14.04□□□□□ -0.16
CLK3-215ENST00000564353 EVPLQ92817 2033 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 NPTXRO95502 500 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 C22orf31O95567 290 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 ZBED1O96006 694 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 LCP1P13796 627 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 BCAR1P56945 870 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 ACVR2BQ13705 512 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 PYROXD2Q8N2H3 581 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 ZNF276Q8N554 614 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 PLD5Q8N7P1 536 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 ARMC2Q8NEN0 867 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 AFG1LQ8WV93 481 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 CYTH2Q99418 400 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 MIPEPQ99797 713 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 DPP3Q9NY33 737 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 NME7Q9Y5B8 376 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 MRPL42Q9Y6G3 142 aaKnown RBP14.03□□□□□ -0.16
CLK3-215ENST00000564353 C2CD4BA6NLJ0 364 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 PFKMP08237 780 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 TGFB3P10600 412 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 ATP2A2P16615 1042 aaKnown RBP14.03□□□□□ -0.16
CLK3-215ENST00000564353 IL4RP24394 825 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 ZNF143P52747 638 aaPredicted RBP14.03□□□□□ -0.16
CLK3-215ENST00000564353 KLHL38Q2WGJ6 581 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 TLDC1Q6P9B6 456 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 CLNKQ7Z7G1 428 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 TTC30AQ86WT1 665 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 TTC13Q8NBP0 860 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 PCDH19Q8TAB3 1148 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 MIEF2Q96C03 454 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 DHX35Q9H5Z1 703 aaKnown RBP14.03□□□□□ -0.16
CLK3-215ENST00000564353 KLK14Q9P0G3 267 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 ZC3H7BQ9UGR2 993 aaKnown RBP14.03□□□□□ -0.16
CLK3-215ENST00000564353 TNFSF13BQ9Y275 285 aa14.03□□□□□ -0.16
CLK3-215ENST00000564353 POLR2AP24928 1970 aaKnown RBP14.02□□□□□ -0.16
CLK3-215ENST00000564353 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.02□□□□□ -0.16
CLK3-215ENST00000564353 MAGEB2O15479 319 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 ZWINTO95229 277 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 METTL18O95568 372 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 YWHAZP63104 245 aaKnown RBP14.02□□□□□ -0.16
CLK3-215ENST00000564353 ANKRD20A2Q5SQ80 823 aa14.02□□□□□ -0.16
CLK3-215ENST00000564353 ANKRD20A1Q5TYW2 823 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms