RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 KRT7P08729 469 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 COL9A1P20849 921 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 LMO2P25791 158 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 PCSK1P29120 753 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 CHRNA3P32297 505 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 CLCN6P51797 869 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 BCAT1P54687 386 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 COPS2P61201 443 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 RPL7AP62424 266 aaKnown RBP9.37□□□□□ -0.91
VPS39-207ENST00000563692 SLC6A3Q01959 620 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 ZNF211Q13398 564 aaPredicted RBP9.37□□□□□ -0.91
VPS39-207ENST00000563692 PKDCCQ504Y2 493 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 WSCD1Q658N2 575 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 KIAA1841Q6NSI8 718 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 TMEM173Q86WV6 379 aaPredicted RBP9.37□□□□□ -0.91
VPS39-207ENST00000563692 SLC13A5Q86YT5 568 aaPredicted RBP9.37□□□□□ -0.91
VPS39-207ENST00000563692 KATNAL2Q8IYT4 538 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 B3GALNT2Q8NCR0 500 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 VN1R2Q8NFZ6 395 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 EXD1Q8NHP7 514 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 SLC35F5Q8WV83 523 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS39-207ENST00000563692 ALG3Q92685 438 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 RBM41Q96IZ5 413 aaKnown RBP9.37□□□□□ -0.91
VPS39-207ENST00000563692 NECTIN4Q96NY8 510 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 PNKPQ96T60 521 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 MED10Q9BTT4 135 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 PHF7Q9BWX1 381 aaPredicted RBP9.37□□□□□ -0.91
VPS39-207ENST00000563692 CD320Q9NPF0 282 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 FAM49BQ9NUQ9 324 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS39-207ENST00000563692 DDX43Q9NXZ2 648 aaKnown RBP9.37□□□□□ -0.91
VPS39-207ENST00000563692 CYTH4Q9UIA0 394 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 HCN4Q9Y3Q4 1203 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 HCFC2Q9Y5Z7 792 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 CITO14578 2027 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 MUC3AQ02505 3323 aa9.37□□□□□ -0.91
VPS39-207ENST00000563692 KIAA1671Q9BY89 1806 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 MYH10P35580 1976 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 FAM187AA6NFU0 413 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 E5RJQ4 531 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 NRP1O14786 923 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 GPR37L1O60883 481 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 GPD1P21695 349 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 KLRC2P26717 231 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 ADORA2BP29275 332 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 RFC1P35251 1148 aaPredicted RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 SCNN1AP37088 669 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 AARSP49588 968 aaKnown RBP eCLIP9.36□□□□□ -0.91
VPS39-207ENST00000563692 ZNF143P52747 638 aaPredicted RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 VSNL1P62760 191 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 PDE4CQ08493 712 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 DHX34Q14147 1143 aaKnown RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 CBX2Q14781 532 aaPredicted RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 MAPRE1Q15691 268 aaKnown RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 EFHC1Q5JVL4 640 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 FAM102AQ5T9C2 384 aaPredicted RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 DCAF12L1Q5VU92 463 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 PMF1Q6P1K2 205 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 HDXQ7Z353 690 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 TTC30AQ86WT1 665 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 CCDC50Q8IVM0 306 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 COLGALT2Q8IYK4 626 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 EIF1ADQ8N9N8 165 aaKnown RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 SLC2A14Q8TDB8 520 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 AUTS2Q8WXX7 1259 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 MAGOHBQ96A72 148 aaKnown RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 RIPOR3Q96MK2 946 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 ACBD6Q9BR61 282 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 CNPY3Q9BT09 278 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 APOL5Q9BWW9 433 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 DUSP16Q9BY84 665 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 UBXN6Q9BZV1 441 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 TRIM7Q9C029 511 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 RAB17Q9H0T7 212 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 ACBD3Q9H3P7 528 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 DPEP3Q9H4B8 488 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 METTL5Q9NRN9 209 aaKnown RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 DPP7Q9UHL4 492 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 RASAL2Q9UJF2 1139 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 UTP11Q9Y3A2 253 aaKnown RBP9.36□□□□□ -0.91
VPS39-207ENST00000563692 NR2E1Q9Y466 385 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 IRAK3Q9Y616 596 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 REV3LO60673 3130 aa9.36□□□□□ -0.91
VPS39-207ENST00000563692 BDP1A6H8Y1 2624 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 FAM86C2PA6NEL3 165 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 F8VP50 259 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 M0QZQ0 153 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 C2CD2LO14523 706 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 XPO1O14980 1071 aaKnown RBP9.35□□□□□ -0.91
VPS39-207ENST00000563692 PHF2O75151 1096 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 TADA2AO75478 443 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 HEXIM1O94992 359 aaKnown RBP9.35□□□□□ -0.91
VPS39-207ENST00000563692 TJP3O95049 919 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 GJB6O95452 261 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 SOD2P04179 222 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 CYP11A1P05108 521 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 ADH1AP07327 375 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 FAM200BP0CF97 657 aa9.35□□□□□ -0.91
VPS39-207ENST00000563692 CCDC130P13994 396 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms