RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 NAIF1Q69YI7 327 aaPredicted RBP17.78■□□□□ 0.44
CLK3-210ENST00000563112 KLHL10Q6JEL2 608 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 PRR23BQ6ZRT6 265 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 TATDN2Q93075 761 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 ACDQ96AP0 544 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 C2orf42Q9NWW7 574 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 HHLA1C9JL84 531 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 SCAMP3O14828 347 aaKnown RBP17.77■□□□□ 0.44
CLK3-210ENST00000563112 ATP5C1P36542 298 aaKnown RBP17.77■□□□□ 0.44
CLK3-210ENST00000563112 PSEN1P49768 467 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 GOLGA8FQ08AF8 430 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 DMWDQ09019 674 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 GOLGA8DPQ0D2H9 430 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 CETN1Q12798 172 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 PKN3Q6P5Z2 889 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 CEP68Q76N32 757 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 WDR5BQ86VZ2 330 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 CAMKK1Q8N5S9 505 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 SLC4A11Q8NBS3 891 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 RPLP0P6Q8NHW5 317 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 NELFBQ8WX92 580 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 SLC35C1Q96A29 364 aa17.77■□□□□ 0.44
CLK3-210ENST00000563112 CCDC163A0A0D9SF12 145 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 HRO43593 1189 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 CD44P16070 742 aaKnown RBP17.76■□□□□ 0.43
CLK3-210ENST00000563112 OPRD1P41143 372 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 KIF11P52732 1056 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 RAD23BP54727 409 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 GAD2Q05329 585 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 CUL2Q13617 745 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 MORC3Q14149 939 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 LAIR1Q6GTX8 287 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 RHBDF2Q6PJF5 856 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 FOXR2Q6PJQ5 311 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 GPRIN1Q7Z2K8 1008 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 TADA2BQ86TJ2 420 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 ZFRQ96KR1 1074 aaKnown RBP17.76■□□□□ 0.43
CLK3-210ENST00000563112 ARID3AQ99856 593 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 UBXN6Q9BZV1 441 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 CYLDQ9NQC7 956 aa17.76■□□□□ 0.43
CLK3-210ENST00000563112 LSM7Q9UK45 103 aaKnown RBP17.76■□□□□ 0.43
CLK3-210ENST00000563112 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.75■□□□□ 0.43
CLK3-210ENST00000563112 PPP1R3GB7ZBB8 358 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 BIN1O00499 593 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 CYP26A1O43174 497 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 IRF1P10914 325 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 RALAP11233 206 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 ADH5P11766 374 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 RARGP13631 454 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 TBXAS1P24557 533 aaPredicted RBP17.75■□□□□ 0.43
CLK3-210ENST00000563112 EIF2DP41214 584 aaKnown RBP17.75■□□□□ 0.43
CLK3-210ENST00000563112 ID4P47928 161 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 FMO5P49326 533 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 LRMPQ12912 555 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 LPAL2Q16609 132 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 BTBD8Q5XKL5 378 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 ARHGAP17Q68EM7 881 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 SYT13Q7L8C5 426 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 PNKPQ96T60 521 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 DUSP9Q99956 384 aaKnown RBP17.75■□□□□ 0.43
CLK3-210ENST00000563112 CHMP5Q9NZZ3 219 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 NAGPAQ9UK23 515 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 MYO16Q9Y6X6 1858 aa17.75■□□□□ 0.43
CLK3-210ENST00000563112 A0A1W2PQH9 124 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 GNA14O95837 355 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 TBX18O95935 607 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 APODP05090 189 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 PGFP49763 221 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 UBE2HP62256 183 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 PREPLQ4J6C6 727 aaPredicted RBP17.74■□□□□ 0.43
CLK3-210ENST00000563112 SGO2Q562F6 1265 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 LY6G5CQ5SRR4 150 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 TTI2Q6NXR4 508 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 CCDC186Q7Z3E2 898 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.74■□□□□ 0.43
CLK3-210ENST00000563112 BBS7Q8IWZ6 715 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 ANKRD52Q8NB46 1076 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 EZH1Q92800 747 aaPredicted RBP17.74■□□□□ 0.43
CLK3-210ENST00000563112 NT5C1BQ96P26 610 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 CDK5RAP1Q96SZ6 601 aaKnown RBP17.74■□□□□ 0.43
CLK3-210ENST00000563112 KLF16Q9BXK1 252 aaPredicted RBP17.74■□□□□ 0.43
CLK3-210ENST00000563112 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.74■□□□□ 0.43
CLK3-210ENST00000563112 HESX1Q9UBX0 185 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 DNMT3LQ9UJW3 386 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 KIAA1257Q9ULG3 409 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 CTNND2Q9UQB3 1225 aa17.74■□□□□ 0.43
CLK3-210ENST00000563112 CEP250Q9BV73 2442 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 PMM2O15305 246 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 P4HA2O15460 535 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 FGFR1OPO95684 399 aaKnown RBP17.73■□□□□ 0.43
CLK3-210ENST00000563112 RETP07949 1114 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 CD19P15391 556 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 BMP6P22004 513 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 PLA2G4AP47712 749 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 SLC6A11P48066 632 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 PXNP49023 591 aaPredicted RBP17.73■□□□□ 0.43
CLK3-210ENST00000563112 SEC13P55735 322 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 PAK1Q13153 545 aa17.73■□□□□ 0.43
CLK3-210ENST00000563112 SRSF5Q13243 272 aaKnown RBP17.73■□□□□ 0.43
CLK3-210ENST00000563112 DMC1Q14565 340 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms