RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SPDYE4A6NLX3 237 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 TBX10O75333 385 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 SCNN1AP37088 669 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 ARHGAP25P42331 645 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 MAMLD1Q13495 774 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 CTC1Q2NKJ3 1217 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 PPP1R15BQ5SWA1 713 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 TRNP1Q6NT89 227 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 ITIH5Q86UX2 942 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 CMASQ8NFW8 434 aaPredicted RBP17.41■□□□□ 0.38
VPS4A-202ENST00000562754 JOSD2Q8TAC2 188 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 IRGQQ8WZA9 623 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 PRKD2Q9BZL6 878 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 NMUR1Q9HB89 426 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 HCFC1R1Q9NWW0 138 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 TRIM10Q9UDY6 481 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 COG5Q9UP83 839 aa17.41■□□□□ 0.38
VPS4A-202ENST00000562754 CCDC195A0A1B0GUA6 201 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 A0A1W2PQH9 124 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 NRG2O14511 850 aaPredicted RBP17.4■□□□□ 0.38
VPS4A-202ENST00000562754 SART1O43290 800 aaKnown RBP17.4■□□□□ 0.38
VPS4A-202ENST00000562754 GRAP2O75791 330 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 ABL1P00519 1130 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 RARS2Q5T160 578 aaKnown RBP17.4■□□□□ 0.38
VPS4A-202ENST00000562754 ANKRD54Q6NXT1 300 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 SYCE2Q6PIF2 218 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 TMEM150AQ86TG1 271 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 ELMOD1Q8N336 334 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 DEFB123Q8N688 67 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 RFFLQ8WZ73 363 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 ZNF512Q96ME7 567 aaPredicted RBP17.4■□□□□ 0.38
VPS4A-202ENST00000562754 CORO1BQ9BR76 489 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 NUP85Q9BW27 656 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 TRIM7Q9C029 511 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 ASNSD1Q9NWL6 643 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 OSER1Q9NX31 292 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.4■□□□□ 0.38
VPS4A-202ENST00000562754 CLEC1BQ9P126 229 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 SALL4Q9UJQ4 1053 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 TMEM59LQ9UK28 342 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 DUSP10Q9Y6W6 482 aa17.4■□□□□ 0.38
VPS4A-202ENST00000562754 SIGLEC16A6NMB1 481 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 HSF2BPO75031 334 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 XYLBO75191 536 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 DAB1O75553 588 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 LTFP02788 710 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 FYNP06241 537 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 ZDHHC11BP0C7U3 371 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 SRGAP2BP0DMP2 458 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 FLT3P36888 993 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 EPHA5P54756 1037 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 YWHAGP61981 247 aaKnown RBP eCLIP17.39■□□□□ 0.37
VPS4A-202ENST00000562754 RPL7AP62424 266 aaKnown RBP17.39■□□□□ 0.37
VPS4A-202ENST00000562754 DLX2Q07687 328 aaPredicted RBP17.39■□□□□ 0.37
VPS4A-202ENST00000562754 TAF12Q16514 161 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 EFHC1Q5JVL4 640 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 TMC5Q6UXY8 1006 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 EMC1Q8N766 993 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 SMG7Q92540 1137 aaKnown RBP17.39■□□□□ 0.37
VPS4A-202ENST00000562754 FAM149B1Q96BN6 582 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 TRIM44Q96DX7 344 aaPredicted RBP17.39■□□□□ 0.37
VPS4A-202ENST00000562754 MCEEQ96PE7 176 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 SLITRK1Q96PX8 696 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 SLC2A13Q96QE2 648 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 SELENOOQ9BVL4 669 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 APOL5Q9BWW9 433 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 OSGEPQ9NPF4 335 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 PARVAQ9NVD7 372 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 MTMR10Q9NXD2 777 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 CLDND1Q9NY35 253 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 EHD2Q9NZN4 543 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 CTTNBP2NLQ9P2B4 639 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 DNMT3BQ9UBC3 853 aaKnown RBP17.39■□□□□ 0.37
VPS4A-202ENST00000562754 SCINQ9Y6U3 715 aa17.39■□□□□ 0.37
VPS4A-202ENST00000562754 A0A0A6YYK5 440 aaPredicted RBP17.38■□□□□ 0.37
VPS4A-202ENST00000562754 USP27XA6NNY8 438 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 MTA2O94776 668 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 F11P03951 625 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 GLI1P08151 1106 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 KRT3P12035 628 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 RFC1P35251 1148 aaPredicted RBP17.38■□□□□ 0.37
VPS4A-202ENST00000562754 LTBRP36941 435 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 CCR2P41597 374 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 NTHL1P78549 312 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 OGDHQ02218 1023 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 TCEAL1Q15170 157 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 BSPRYQ5W0U4 402 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 ZNF662Q6ZS27 426 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 GAREM2Q75VX8 874 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 MON1AQ86VX9 555 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 REXO1L1PQ8IX06 675 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 C17orf53Q8N3J3 647 aaPredicted RBP17.38■□□□□ 0.37
VPS4A-202ENST00000562754 SLC35G2Q8TBE7 412 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 ZNF564Q8TBZ8 553 aaPredicted RBP17.38■□□□□ 0.37
VPS4A-202ENST00000562754 OVCA2Q8WZ82 227 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 ASAH2Q9NR71 780 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 UVRAGQ9P2Y5 699 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 UXTQ9UBK9 157 aaPredicted RBP17.38■□□□□ 0.37
VPS4A-202ENST00000562754 CDH22Q9UJ99 828 aa17.38■□□□□ 0.37
VPS4A-202ENST00000562754 ZKSCAN5Q9Y2L8 839 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms