RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 TTI1O43156 1089 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 DAB1O75553 588 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 CDKN2BP42772 138 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 GUCY2DQ02846 1103 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 SYPL2Q5VXT5 272 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 TTC27Q6P3X3 843 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 KCNT2Q6UVM3 1135 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 ATAD1Q8NBU5 361 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 KCTD6Q8NC69 237 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 CCDC26Q8TAB7 109 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 ATG4AQ8WYN0 398 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 CENPIQ92674 756 aaPredicted RBP22.23■■□□□ 1.15
CLN3-209ENST00000561689 BADQ92934 168 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 VN1R3Q9BXE9 311 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 POPDC2Q9HBU9 364 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 PRKAG2Q9UGJ0 569 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 NAALADL1Q9UQQ1 740 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 R3HDM2Q9Y2K5 976 aaKnown RBP22.23■■□□□ 1.15
CLN3-209ENST00000561689 COL4A6Q14031 1691 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 ESYT3A0FGR9 886 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 ZBBXA8MT70 800 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 FYNP06241 537 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 TUBBP07437 444 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 KDELR1P24390 212 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 PITX1P78337 314 aaPredicted RBP22.23■■□□□ 1.15
CLN3-209ENST00000561689 IFRD2Q12894 506 aaPredicted RBP22.23■■□□□ 1.15
CLN3-209ENST00000561689 BRD3Q15059 726 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 TFDP3Q5H9I0 405 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 CMASQ8NFW8 434 aaPredicted RBP22.23■■□□□ 1.15
CLN3-209ENST00000561689 SLC2A13Q96QE2 648 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 PRDM10Q9NQV6 1147 aa22.23■■□□□ 1.15
CLN3-209ENST00000561689 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.23■■□□□ 1.15
CLN3-209ENST00000561689 MRPL42Q9Y6G3 142 aaKnown RBP22.23■■□□□ 1.15
CLN3-209ENST00000561689 BAIAP3O94812 1187 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 CPB1P15086 417 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 CHRNA3P32297 505 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 SULT1E1P49888 294 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 COPS2P61201 443 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 PPP2R5EQ16537 467 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 CYP1B1Q16678 543 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 SLC25A52Q3SY17 297 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 SDHAF4Q5VUM1 108 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 ANKS3Q6ZW76 656 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 BHLHA9Q7RTU4 235 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 TTC9BQ8N6N2 239 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 FAM118BQ9BPY3 351 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 EPB41L5Q9HCM4 733 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 PNPLA8Q9NP80 782 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 CHST7Q9NS84 486 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 GPATCH2LQ9NWQ4 482 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 PCDHB5Q9Y5E4 795 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 VWA8A3KMH1 1905 aa22.22■■□□□ 1.15
CLN3-209ENST00000561689 hCG_1818297A0A087WSY0 165 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 CCDC151A5D8V7 595 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 TBC1D4O60343 1298 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 SEC31AO94979 1220 aaKnown RBP22.21■■□□□ 1.15
CLN3-209ENST00000561689 EFEMP2O95967 443 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 NOS2P35228 1153 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 KCNJ1P48048 391 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 GPR15P49685 360 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 SLC5A3P53794 718 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 DR1Q01658 176 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 SNX1Q13596 522 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 DDR2Q16832 855 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 CCDC137Q6PK04 289 aaKnown RBP22.21■■□□□ 1.15
CLN3-209ENST00000561689 ZNF365Q70YC5 407 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 MAATS1Q7Z4T9 603 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 GSPT2Q8IYD1 628 aaKnown RBP22.21■■□□□ 1.15
CLN3-209ENST00000561689 STKLD1Q8NE28 680 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 MAIP1Q8WWC4 291 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 FUBP3Q96I24 572 aaKnown RBP eCLIP22.21■■□□□ 1.15
CLN3-209ENST00000561689 YME1L1Q96TA2 773 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 LTBP2Q14767 1821 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 SYNJ2BP-COX16A0A087WUM0 186 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 H7C4K7 107 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 CAPN9O14815 690 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 MYBL2P10244 700 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 TRADDQ15628 312 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 USP41Q3LFD5 358 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 PM20D1Q6GTS8 502 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 CCNI2Q6ZMN8 369 aaPredicted RBP22.21■■□□□ 1.15
CLN3-209ENST00000561689 RIN2Q8WYP3 895 aaPredicted RBP22.21■■□□□ 1.15
CLN3-209ENST00000561689 EDEM1Q92611 657 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 ZNF558Q96NG5 402 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 CALN1Q9BXU9 219 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 COX16Q9P0S2 106 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 SLC27A5Q9Y2P5 690 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 USP3Q9Y6I4 520 aa22.21■■□□□ 1.15
CLN3-209ENST00000561689 C2CD2LO14523 706 aa22.2■■□□□ 1.14
CLN3-209ENST00000561689 TNFRSF10BO14763 440 aa22.2■■□□□ 1.14
CLN3-209ENST00000561689 TJP3O95049 919 aa22.2■■□□□ 1.14
CLN3-209ENST00000561689 LTFP02788 710 aa22.2■■□□□ 1.14
CLN3-209ENST00000561689 NCAM1P13591 858 aa22.2■■□□□ 1.14
CLN3-209ENST00000561689 MCM3P25205 808 aa22.2■■□□□ 1.14
CLN3-209ENST00000561689 COILP38432 576 aaPredicted RBP22.2■■□□□ 1.14
CLN3-209ENST00000561689 BOLA3Q53S33 107 aa22.2■■□□□ 1.14
CLN3-209ENST00000561689 ZC3H12AQ5D1E8 599 aaKnown RBP22.2■■□□□ 1.14
CLN3-209ENST00000561689 OTUD1Q5VV17 481 aaPredicted RBP22.2■■□□□ 1.14
CLN3-209ENST00000561689 RNF19BQ6ZMZ0 732 aa22.2■■□□□ 1.14
CLN3-209ENST00000561689 CMTR2Q8IYT2 770 aaKnown RBP22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms