RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ATL3Q6DD88 541 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 IL31Q6EBC2 164 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 SPOPLQ6IQ16 392 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 TTC30AQ86WT1 665 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 SLC9A9Q8IVB4 645 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 ALLCQ8N6M5 410 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 MDGA1Q8NFP4 955 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 GOLGA5Q8TBA6 731 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 SMOQ99835 787 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 DMAP1Q9NPF5 467 aaPredicted RBP12.34□□□□□ -0.43
USP3-220ENST00000561381 KRT82Q9NSB4 513 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 IL37Q9NZH6 218 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 CFAP45Q9UL16 551 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 MMP17Q9ULZ9 603 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 MYO18AQ92614 2054 aaKnown RBP12.33□□□□□ -0.44
USP3-220ENST00000561381 SGK1O00141 431 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 RHOBTB1O94844 696 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 KAT7O95251 611 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 KLF8O95600 359 aaPredicted RBP12.33□□□□□ -0.44
USP3-220ENST00000561381 ADH5P11766 374 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 PFKFB1P16118 471 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 NDST1P52848 882 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 AP3M2P53677 418 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 KDSRQ06136 332 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 DSG2Q14126 1118 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 ELF2Q15723 593 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 CRY1Q16526 586 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 ZACNQ401N2 412 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 HECTD3Q5T447 861 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 CEP135Q66GS9 1140 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 SV2AQ7L0J3 742 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 RASSF3Q86WH2 238 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 DDX42Q86XP3 938 aaKnown RBP eCLIP12.33□□□□□ -0.44
USP3-220ENST00000561381 KIAA1958Q8N8K9 716 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 C12orf29Q8N999 325 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 IL17RCQ8NAC3 791 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 TXNDC5Q8NBS9 432 aaKnown RBP12.33□□□□□ -0.44
USP3-220ENST00000561381 PDZD8Q8NEN9 1154 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 SLC2A14Q8TDB8 520 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 PTCD2Q8WV60 388 aaKnown RBP12.33□□□□□ -0.44
USP3-220ENST00000561381 OVCA2Q8WZ82 227 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 SMARCD1Q96GM5 515 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 TNIP3Q96KP6 325 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 PNKPQ96T60 521 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 VPS45Q9NRW7 570 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 FAM49BQ9NUQ9 324 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 CACNA1BQ00975 2339 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 ATP8B3O60423 1300 aa12.33□□□□□ -0.44
USP3-220ENST00000561381 THADAQ6YHU6 1953 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 ACACBO00763 2458 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 E2F8A0AVK6 867 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 BCLAF3A2AJT9 711 aaKnown RBP12.32□□□□□ -0.44
USP3-220ENST00000561381 PDXKO00764 312 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 ADAM23O75077 832 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 CAVIN2O95810 425 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 TBX18O95935 607 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 ADH1CP00326 375 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 ASS1P00966 412 aaKnown RBP12.32□□□□□ -0.44
USP3-220ENST00000561381 APODP05090 189 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 ZDHHC11BP0C7U3 371 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 IRF1P10914 325 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 PDIA4P13667 645 aaKnown RBP12.32□□□□□ -0.44
USP3-220ENST00000561381 CMA1P23946 247 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 KIR2DL1P43626 348 aaPredicted RBP12.32□□□□□ -0.44
USP3-220ENST00000561381 ASPAP45381 313 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 MAP3K7CLP57077 242 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 MRPS21P82921 87 aaKnown RBP12.32□□□□□ -0.44
USP3-220ENST00000561381 SGSM1Q2NKQ1 1148 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 USP39Q53GS9 565 aaKnown RBP12.32□□□□□ -0.44
USP3-220ENST00000561381 N4BP2L1Q5TBK1 243 aaPredicted RBP12.32□□□□□ -0.44
USP3-220ENST00000561381 SNX30Q5VWJ9 437 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 PMS2CLQ68D20 193 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 GPRIN1Q7Z2K8 1008 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 BBS7Q8IWZ6 715 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 PHTF2Q8N3S3 785 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 FRMD1Q8N878 549 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 NAT16Q8N8M0 369 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 CCDC26Q8TAB7 109 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 RLN3Q8WXF3 142 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 CNOT6LQ96LI5 555 aaKnown RBP12.32□□□□□ -0.44
USP3-220ENST00000561381 TWNKQ96RR1 684 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 ARHGEF4Q9NR80 690 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 TBC1D14Q9P2M4 693 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 HPSEQ9Y251 543 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 SH3BP1Q9Y3L3 701 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 MYH10P35580 1976 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 NUP205Q92621 2012 aa12.32□□□□□ -0.44
USP3-220ENST00000561381 A0A0A0MRY4 1105 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 FAM92AA1XBS5 289 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 TRIM24O15164 1050 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 KRT37O76014 449 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 HLA-DRAP01903 254 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 RPN1P04843 607 aaKnown RBP12.31□□□□□ -0.44
USP3-220ENST00000561381 TRIM49P0CI25 452 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 TRIM49CP0CI26 452 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 ADORA2BP29275 332 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 EIF2DP41214 584 aaKnown RBP12.31□□□□□ -0.44
USP3-220ENST00000561381 GRIA2P42262 883 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 PIK3CAP42336 1068 aa12.31□□□□□ -0.44
USP3-220ENST00000561381 TUBP50607 506 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms