RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 DDX39BQ13838 428 aaKnown RBP13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 TMEM120AQ9BXJ8 343 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 CLPBQ9H078 707 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 CYP3A43Q9HB55 503 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 KBTBD13C9JR72 458 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 NPTXRO95502 500 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 ACO1P21399 889 aaKnown RBP13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 FASP25445 335 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 SERPINH1P50454 418 aaKnown RBP13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 PRMT9Q6P2P2 845 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 OSCP1Q8WVF1 389 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 DEPDC7Q96QD5 511 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 GINS4Q9BRT9 223 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 DMGDHQ9UI17 866 aaKnown RBP13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 UBOX5O94941 541 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 FAM58BPP0C7Q3 252 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 ST13P50502 369 aaKnown RBP13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 BCAT1P54687 386 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 C11orf63Q6NUN7 778 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 SPOCD1Q6ZMY3 1216 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 STRA8Q7Z7C7 330 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 PGBD3Q8N328 593 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 PARVBQ9HBI1 364 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 PCDH9Q9HC56 1237 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 ENOPH1Q9UHY7 261 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 HPSEQ9Y251 543 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 F5H5T6 163 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 UBDO15205 165 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 AP1G2O75843 785 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 PRKAA1Q13131 559 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 PWP1Q13610 501 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 IZUMO2Q6UXV1 221 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 MICALL2Q8IY33 904 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 EMILIN2Q9BXX0 1053 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 TRIM8Q9BZR9 551 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 UBXN6Q9BZV1 441 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 PLA2R1Q13018 1463 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 MGAT4DA6NG13 374 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 NBNO60934 754 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 ATP6V1B2P21281 511 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 SFSWAPQ12872 951 aaKnown RBP13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 CAMK2GQ13555 558 aaPredicted RBP13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 ARHGAP15Q53QZ3 475 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 CLEC10AQ8IUN9 316 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 FAM120BQ96EK7 910 aaKnown RBP13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 COLEC11Q9BWP8 271 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 NMRK2Q9NPI5 230 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 KLHL3Q9UH77 587 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 CHORDC1Q9UHD1 332 aaPredicted RBP13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 KIF1BO60333 1816 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 PLEKHA7Q6IQ23 1121 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 CGRRF1Q99675 332 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 BDH2Q9BUT1 245 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 VTA1Q9NP79 307 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 IARS2Q9NSE4 1012 aaKnown RBP13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 COMMD8Q9NX08 183 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 TSPOAP1O95153 1857 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 ASS1P00966 412 aaKnown RBP13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 IRF1P10914 325 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 CENPAP49450 140 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 PTENP60484 403 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 ALDH6A1Q02252 535 aaKnown RBP13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZNF484Q5JVG2 852 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 ATG16L2Q8NAA4 619 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 ATXN2LQ8WWM7 1075 aaKnown RBP13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 GPAMQ9HCL2 828 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 VTI1BQ9UEU0 232 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 TFR2Q9UP52 801 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 LRCH1Q9Y2L9 728 aa13.6□□□□□ -0.23
CSPG4P11-201ENST00000560634 PXDNLA1KZ92 1463 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 AFF2P51816 1311 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 TMEM114B3SHH9 223 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 CHI3L1P36222 383 aaPredicted RBP13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 CCT8P50990 548 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 GALNTL6Q49A17 601 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 PDPK2PQ6A1A2 396 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 RBM43Q6ZSC3 357 aaKnown RBP13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 CBWD2Q8IUF1 395 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 SVOPQ8N4V2 548 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 C19orf18Q8NEA5 215 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 FAM172AQ8WUF8 416 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 PPP1R10Q96QC0 940 aaKnown RBP13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZCWPW1Q9H0M4 648 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 PIK3CDO00329 1044 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 MPOP05164 745 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 RRM1P23921 792 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 GUCA1AP43080 201 aaPredicted RBP13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 R3HDM1Q15032 1099 aaKnown RBP13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 DPP10Q8N608 796 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 RUSC1Q9BVN2 902 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 LACRTQ9GZZ8 138 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 DMAP1Q9NPF5 467 aaPredicted RBP13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 PAPOLBQ9NRJ5 636 aaKnown RBP13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 GPRC5DQ9NZD1 345 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 EGFRP00533 1210 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 KRT6AP02538 564 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 KRT6BP04259 564 aa13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 RPLP2P05387 115 aaKnown RBP13.59□□□□□ -0.23
CSPG4P11-201ENST00000560634 KRT6CP48668 564 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms