RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 CHD6Q8TD26 2715 aa14.88□□□□□ -0.03
LDLR-213ENST00000560502 CLIC2O15247 247 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 P4HA2O15460 535 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 ARHGAP6O43182 974 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 CCP110O43303 1012 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 HCRTO43612 131 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 HUS1O60921 280 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 TCF3P15923 654 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 TRIM21P19474 475 aaKnown RBP14.87□□□□□ -0.03
LDLR-213ENST00000560502 PMLP29590 882 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 PLK5Q496M5 336 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 FBXO43Q4G163 708 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 SYT13Q7L8C5 426 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 LIMS2Q7Z4I7 341 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 ADGRF2Q8IZF7 708 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 CPA6Q8N4T0 437 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 TOP6BLQ8N6T0 577 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 C12orf50Q8NA57 414 aaPredicted RBP14.87□□□□□ -0.03
LDLR-213ENST00000560502 KIAA1524Q8TCG1 905 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 SLC35C1Q96A29 364 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 FUBP3Q96I24 572 aaKnown RBP eCLIP14.87□□□□□ -0.03
LDLR-213ENST00000560502 HHIPQ96QV1 700 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 CBWD1Q9BRT8 395 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 TTYH3Q9C0H2 523 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 NUCKS1Q9H1E3 243 aaKnown RBP14.87□□□□□ -0.03
LDLR-213ENST00000560502 HSPBP1Q9NZL4 362 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 GTF3C4Q9UKN8 822 aa14.87□□□□□ -0.03
LDLR-213ENST00000560502 ABCA7Q8IZY2 2146 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 TRAV19A0A0A6YYK7 116 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 PMM2O15305 246 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 LDHAP00338 332 aaKnown RBP14.86□□□□□ -0.03
LDLR-213ENST00000560502 USP17L7P0C7H9 530 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 MPLP40238 635 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 MAGEA11P43364 429 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 CYP2J2P51589 502 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 ZBED6P86452 979 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 KCNH2Q12809 1159 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 LRMPQ12912 555 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 ST3GAL2Q16842 350 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 SOWAHAQ2M3V2 549 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 TSR1Q2NL82 804 aaKnown RBP14.86□□□□□ -0.03
LDLR-213ENST00000560502 EML3Q32P44 896 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 STPG1Q5TH74 334 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 IL31Q6EBC2 164 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 FAM171BQ6P995 826 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 RPLP0P6Q8NHW5 317 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 CD101Q93033 1021 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 ATP2A3Q93084 1043 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 CYP2S1Q96SQ9 504 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 BAG1Q99933 345 aaPredicted RBP14.86□□□□□ -0.03
LDLR-213ENST00000560502 MTMR12Q9C0I1 747 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 DUSP15Q9H1R2 295 aaPredicted RBP14.86□□□□□ -0.03
LDLR-213ENST00000560502 PDE11AQ9HCR9 933 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 PLCB1Q9NQ66 1216 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 DUS2Q9NX74 493 aaKnown RBP14.86□□□□□ -0.03
LDLR-213ENST00000560502 LUC7L2Q9Y383 392 aaKnown RBP14.86□□□□□ -0.03
LDLR-213ENST00000560502 SNX9Q9Y5X1 595 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 WNT6Q9Y6F9 365 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 PTPRJQ12913 1337 aa14.86□□□□□ -0.03
LDLR-213ENST00000560502 GOLGA8IPA6NC78 632 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 GOLGA8JA6NMD2 632 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 CKMP06732 381 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 PCSK1P29120 753 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 CASP14P31944 242 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 IFNAR2P48551 515 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 LHX1P48742 406 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 CASP4P49662 377 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 RBP5P82980 135 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 DCAF17Q5H9S7 520 aaPredicted RBP14.85□□□□□ -0.03
LDLR-213ENST00000560502 N4BP2L1Q5TBK1 243 aaPredicted RBP14.85□□□□□ -0.03
LDLR-213ENST00000560502 SPATA2LQ8IUW3 424 aaPredicted RBP14.85□□□□□ -0.03
LDLR-213ENST00000560502 FMNL3Q8IVF7 1028 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 ARL14EPQ8N8R7 260 aaPredicted RBP14.85□□□□□ -0.03
LDLR-213ENST00000560502 NEK11Q8NG66 645 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 OR8K1Q8NGG5 319 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 TMC2Q8TDI7 906 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 KBTBD7Q8WVZ9 684 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 EXOC4Q96A65 974 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 ACDQ96AP0 544 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 PCMTD1Q96MG8 357 aaPredicted RBP14.85□□□□□ -0.03
LDLR-213ENST00000560502 ZNF830Q96NB3 372 aaPredicted RBP14.85□□□□□ -0.03
LDLR-213ENST00000560502 DNAJC7Q99615 494 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 SMOC1Q9H4F8 434 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 TRPC7Q9HCX4 862 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 VPS45Q9NRW7 570 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 ABHD10Q9NUJ1 306 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 EBF1Q9UH73 591 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 ARHGAP26Q9UNA1 814 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 THADAQ6YHU6 1953 aa14.85□□□□□ -0.03
LDLR-213ENST00000560502 C2orf78A6NCI8 922 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 APBB3O95704 486 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 KRT19P08727 400 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 GTF2H1P32780 548 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 KRT9P35527 623 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 SHC2P98077 582 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 CDK17Q00537 523 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 CETN1Q12798 172 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 DMC1Q14565 340 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 GAB4Q2WGN9 574 aa14.84□□□□□ -0.03
LDLR-213ENST00000560502 GBP6Q6ZN66 633 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms