RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DDX42Q86XP3 938 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP3-216ENST00000559873 ZDHHC14Q8IZN3 488 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 RNF139Q8WU17 664 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 SMARCD2Q92925 531 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 NXPE3Q969Y0 559 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 FAM149B1Q96BN6 582 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 C18orf8Q96DM3 657 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 TCEAL4Q96EI5 215 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 TRIM11Q96F44 468 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 CPXM1Q96SM3 734 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP3-216ENST00000559873 ABCC13Q9NSE7 274 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 OLA1Q9NTK5 396 aaKnown RBP10.58□□□□□ -0.72
USP3-216ENST00000559873 ASNSD1Q9NWL6 643 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 WDR35Q9P2L0 1181 aa10.58□□□□□ -0.72
USP3-216ENST00000559873 A0A1W2PQH9 124 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 SSU72P8A0A1W2PR75 194 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 C2CD4DB7Z1M9 353 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 CAPN9O14815 690 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 TLR5O60602 858 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 HSF2BPO75031 334 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 MOSPD3O75425 235 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 GLI1P08151 1106 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 CFHP08603 1231 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 GZMAP12544 262 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 SKILP12757 684 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 UNGP13051 313 aaPredicted RBP10.57□□□□□ -0.72
USP3-216ENST00000559873 GJA1P17302 382 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 DESP17661 470 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 CHRNB2P17787 502 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 MMP8P22894 467 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 SP100P23497 879 aaPredicted RBP10.57□□□□□ -0.72
USP3-216ENST00000559873 ATP5C1P36542 298 aaKnown RBP10.57□□□□□ -0.72
USP3-216ENST00000559873 ADKP55263 362 aaKnown RBP10.57□□□□□ -0.72
USP3-216ENST00000559873 GSDMDP57764 484 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 CDK17Q00537 523 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 ZP2Q05996 745 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 ZNF268Q14587 947 aaPredicted RBP10.57□□□□□ -0.72
USP3-216ENST00000559873 PTPN20Q4JDL3 420 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 EFHC1Q5JVL4 640 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 TXNDC8Q6A555 127 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 OR6B2Q6IFH4 312 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 KLHDC10Q6PID8 442 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 ZNF571Q7Z3V5 609 aaPredicted RBP10.57□□□□□ -0.72
USP3-216ENST00000559873 TMEM150AQ86TG1 271 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 PHF13Q86YI8 300 aaPredicted RBP10.57□□□□□ -0.72
USP3-216ENST00000559873 CMTM8Q8IZV2 173 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 ZNF276Q8N554 614 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 WDTC1Q8N5D0 677 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 MAB21L3Q8N8X9 362 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 ZSCAN18Q8TBC5 510 aaPredicted RBP10.57□□□□□ -0.72
USP3-216ENST00000559873 MCRS1Q96EZ8 462 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 CCDC42Q96M95 316 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 MYADMQ96S97 322 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 C11orf70Q9BRQ4 267 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.57□□□□□ -0.72
USP3-216ENST00000559873 IGSF9Q9P2J2 1179 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 CYTH4Q9UIA0 394 aa10.57□□□□□ -0.72
USP3-216ENST00000559873 GREB1Q4ZG55 1949 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 NCOR1O75376 2440 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 ANKRD62A6NC57 917 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 YJEFN3A6XGL0 299 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 LOC730098B7Z3J9 87 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 E7ENQ6 273 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 PIK3R2O00459 728 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 PAPSS1O43252 624 aaPredicted RBP10.56□□□□□ -0.72
USP3-216ENST00000559873 NRDCO43847 1150 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 AKR1B10O60218 316 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 IPO7O95373 1038 aaKnown RBP10.56□□□□□ -0.72
USP3-216ENST00000559873 OLFM2O95897 454 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 OAS1P00973 400 aaKnown RBP10.56□□□□□ -0.72
USP3-216ENST00000559873 LTFP02788 710 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 MYBL1P10243 752 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 MBL2P11226 248 aaPredicted RBP10.56□□□□□ -0.72
USP3-216ENST00000559873 BMP1P13497 986 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 RARGP13631 454 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 HDCP19113 662 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 GABRB2P47870 512 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 SLC6A3Q01959 620 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 C1QBPQ07021 282 aaKnown RBP10.56□□□□□ -0.72
USP3-216ENST00000559873 GSE1Q14687 1217 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 C10orf120Q5SQS8 335 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 STXBP5Q5T5C0 1151 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 BSPRYQ5W0U4 402 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 HGSNATQ68CP4 663 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 MMS22LQ6ZRQ5 1243 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 FAM183BPQ6ZVS7 135 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 BEND5Q7L4P6 421 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 CELF5Q8N6W0 485 aaKnown RBP10.56□□□□□ -0.72
USP3-216ENST00000559873 FEZF2Q8TBJ5 459 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 CPA5Q8WXQ8 436 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 VCPIP1Q96JH7 1222 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 ASB16Q96NS5 453 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 PANX2Q96RD6 677 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 SYT11Q9BT88 431 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 TRPV4Q9HBA0 871 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 POPDC2Q9HBU9 364 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 ZFP14Q9HCL3 533 aa10.56□□□□□ -0.72
USP3-216ENST00000559873 LUC7LQ9NQ29 371 aaKnown RBP10.56□□□□□ -0.72
USP3-216ENST00000559873 TMEM51Q9NW97 253 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms