RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 XYLT2Q9H1B5 865 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 SLC39A2Q9NP94 309 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 TLR8Q9NR97 1041 aaKnown RBP9.72□□□□□ -0.85
HDDC3-204ENST00000559834 FAM13BQ9NYF5 915 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 NME7Q9Y5B8 376 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 TMEM8BA6NDV4 472 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 ANTXRLA6NF34 631 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 POLR2DO15514 142 aaKnown RBP9.71□□□□□ -0.86
HDDC3-204ENST00000559834 ADAM23O75077 832 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 ZNF217O75362 1048 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 TULP3O75386 442 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 AP1G2O75843 785 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 ZDHHC11BP0C7U3 371 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 HNRNPLP14866 589 aaKnown RBP eCLIP9.71□□□□□ -0.86
HDDC3-204ENST00000559834 NTSR1P30989 418 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 ATP5C1P36542 298 aaKnown RBP9.71□□□□□ -0.86
HDDC3-204ENST00000559834 PTGER3P43115 390 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 SLC5A3P53794 718 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 CDH8P55286 799 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 GFPT1Q06210 699 aaPredicted RBP9.71□□□□□ -0.86
HDDC3-204ENST00000559834 EHHADHQ08426 723 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 NCOA4Q13772 614 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 DUOXA1Q1HG43 343 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 BMT2Q1RMZ1 405 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 MAP7D1Q3KQU3 841 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 C10orf76Q5T2E6 689 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 SHC4Q6S5L8 630 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 UNQ6494/PRO21346Q6UXR6 183 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 HTR3DQ70Z44 454 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 ARMCX6Q7L4S7 300 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 FAM35AQ86V20 835 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 TMEM25Q86YD3 366 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 SFTPA1Q8IWL2 248 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 ETFBKMTQ8IXQ9 262 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 CRYBG2Q8N1P7 616 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 HDDC3Q8N4P3 179 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 PARD3BQ8TEW8 1205 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 TAF4BQ92750 862 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 DNAI2Q9GZS0 605 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.71□□□□□ -0.861e-56■■■■■ 327
HDDC3-204ENST00000559834 FOXD4L1Q9NU39 408 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 TMEM30AQ9NV96 361 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 WDR35Q9P2L0 1181 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 MBD1Q9UIS9 605 aaPredicted RBP9.71□□□□□ -0.86
HDDC3-204ENST00000559834 PILRBQ9UKJ0 227 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 SLC6A14Q9UN76 642 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 STARD13Q9Y3M8 1113 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 GON4LQ3T8J9 2241 aa9.71□□□□□ -0.86
HDDC3-204ENST00000559834 NUP205Q92621 2012 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 FAM92AA1XBS5 289 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 UPK3BL1B0FP48 263 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 C1QTNF9BB2RNN3 333 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 UPK3BL2E5RIL1 263 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 K7ELQ4 463 aaPredicted RBP9.7□□□□□ -0.86
HDDC3-204ENST00000559834 C4BPAP04003 597 aaKnown RBP9.7□□□□□ -0.86
HDDC3-204ENST00000559834 CFIP05156 583 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 C1QTNF9P0C862 333 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 HOXB2P14652 356 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 ENGP17813 658 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 AFMP43652 599 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 MAPK8P45983 427 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 CLDN10P78369 228 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 RPL6Q02878 288 aaKnown RBP9.7□□□□□ -0.86
HDDC3-204ENST00000559834 MESP2Q0VG99 397 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 GRAMD4Q6IC98 578 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 PAQR9Q6ZVX9 377 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 ACOT1Q86TX2 421 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 UNC93AQ86WB7 457 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 BBS7Q8IWZ6 715 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 CEP57L1Q8IYX8 460 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 FUKQ8N0W3 1084 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 PHTF2Q8N3S3 785 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 FRMD1Q8N878 549 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 TERB1Q8NA31 727 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 KDF1Q8NAX2 398 aaPredicted RBP9.7□□□□□ -0.86
HDDC3-204ENST00000559834 DEFB124Q8NES8 71 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 ZFRQ96KR1 1074 aaKnown RBP9.7□□□□□ -0.86
HDDC3-204ENST00000559834 SCNM1Q9BWG6 230 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 BBS2Q9BXC9 721 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 BLZF1Q9H2G9 400 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 SMYD3Q9H7B4 428 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 CCSER2Q9H7U1 834 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 KRT82Q9NSB4 513 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 TMEM74BQ9NUR3 256 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 GMIPQ9P107 970 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 LSM7Q9UK45 103 aaKnown RBP9.7□□□□□ -0.86
HDDC3-204ENST00000559834 ZMIZ1Q9ULJ6 1067 aa9.7□□□□□ -0.86
HDDC3-204ENST00000559834 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.69□□□□□ -0.86
HDDC3-204ENST00000559834 LRRIQ3A6PVS8 624 aaPredicted RBP9.69□□□□□ -0.86
HDDC3-204ENST00000559834 IKBKBO14920 756 aa9.69□□□□□ -0.86
HDDC3-204ENST00000559834 TLR5O60602 858 aa9.69□□□□□ -0.86
HDDC3-204ENST00000559834 OPHN1O60890 802 aa9.69□□□□□ -0.86
HDDC3-204ENST00000559834 SYPP08247 313 aa9.69□□□□□ -0.86
HDDC3-204ENST00000559834 SERPINF2P08697 491 aa9.69□□□□□ -0.86
HDDC3-204ENST00000559834 IRF1P10914 325 aa9.69□□□□□ -0.86
HDDC3-204ENST00000559834 CHRM1P11229 460 aaPredicted RBP9.69□□□□□ -0.86
HDDC3-204ENST00000559834 GABRG2P18507 467 aa9.69□□□□□ -0.86
HDDC3-204ENST00000559834 ITPKAP23677 461 aa9.69□□□□□ -0.86
HDDC3-204ENST00000559834 PLA2G4AP47712 749 aa9.69□□□□□ -0.86
HDDC3-204ENST00000559834 ME1P48163 572 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms