RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 PEX10O60683 326 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 RNASEH2AO75792 299 aaKnown RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 CABYRO75952 493 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 TIAF1O95411 115 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 SGPL1O95470 568 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ZNF865P0CJ78 1059 aaPredicted RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 EPB41P11171 864 aaKnown RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 FOSL2P15408 326 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ZNF18P17022 549 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 CASP1P29466 404 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 PSMC2P35998 433 aaKnown RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 NAMPTP43490 491 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 MTIF2P46199 727 aaKnown RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 MTNR1BP49286 362 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 FLT3LGP49771 235 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ZNF75DP51815 510 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 NCKAP1LP55160 1127 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 STX17P56962 302 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 NKX3-2P78367 333 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 GTF2BQ00403 316 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 SP4Q02446 784 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ENPEPQ07075 957 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ARHGAP1Q07960 439 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ADAM9Q13443 819 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 PDE1CQ14123 709 aaPredicted RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 KCNJ12Q14500 433 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 TARBP2Q15633 366 aaKnown RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 GPR19Q15760 415 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 FSCN1Q16658 493 aaKnown RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 HSDL1Q3SXM5 330 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 TCP11X2Q5H9J9 407 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ANKRD40Q6AI12 368 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 TTI2Q6NXR4 508 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 FDX2Q6P4F2 183 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 FRMD5Q7Z6J6 570 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 SFR1Q86XK3 245 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 CREBRFQ8IUR6 639 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 CCDC103Q8IW40 242 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ZBTB8OSQ8IWT0 167 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 C12orf56Q8IXR9 622 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 PCSK9Q8NBP7 692 aaKnown RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 KIAA0895Q8NCT3 520 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 NAXEQ8NCW5 288 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 RAET1EQ8TD07 263 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 SCFD1Q8WVM8 642 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 PSPC1Q8WXF1 523 aaKnown RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 PDLIM2Q96JY6 352 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ASB2Q96Q27 587 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 CRB3Q9BUF7 120 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ARHGAP39Q9C0H5 1083 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 KATNBL1Q9H079 304 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 BTBD1Q9H0C5 482 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 WNT8AQ9H1J5 351 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 MYLK2Q9H1R3 596 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 PDLIM7Q9NR12 457 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 PDGFCQ9NRA1 345 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 RASSF1Q9NS23 344 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 CLEC1BQ9P126 229 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 SRRDQ9UH36 339 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ADGRE2Q9UHX3 823 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 L1RE1Q9UN81 338 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 PCDHA11Q9Y5I1 949 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 LOC285556D6RIA3 1793 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 NRCAMQ92823 1304 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 REV3LO60673 3130 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 IGKV6-21A0A0C4DH24 114 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 NPHP3-ACAD11A0A0J9YXS1 232 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 A0A1W2PQC6 194 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 K7ENM7 598 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 K7ERI5 159 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 B3GALT2O43825 422 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 N4BP1O75113 896 aaKnown RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 KRT37O76014 449 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 SLITRK5O94991 958 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 STBD1O95210 358 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 ARIH2O95376 493 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 LGALS2P05162 132 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 MMP3P08254 477 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 RARBP10826 455 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 KRT13P13646 458 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 SYN1P17600 705 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 ARL2P36404 184 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 NPEPPSP55786 919 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 PEX3P56589 373 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 LSAMPQ13449 338 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 NR1I3Q14994 352 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 EMC2Q15006 297 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 POLD3Q15054 466 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 PLCB4Q15147 1175 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 MAN2A1Q16706 1144 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 UGCGQ16739 394 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 KYAT1Q16773 422 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 PLA2G4EQ3MJ16 856 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 CCDC40Q4G0X9 1142 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 RNF220Q5VTB9 566 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 CDKAL1Q5VV42 579 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 IGF2-ASQ6U949 168 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 EP400NLQ6ZTU2 488 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 HAUS6Q7Z4H7 955 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 TMC3Q7Z5M5 1100 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms