RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ADAMTS6Q9UKP5 1117 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 FZD1Q9UP38 647 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 HEMK1Q9Y5R4 338 aaPredicted RBP11.77□□□□□ -0.52
LDLR-208ENST00000558518 VAV1P15498 845 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 PMLP29590 882 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 PGGT1BP53609 377 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 MRPS22P82650 360 aaKnown RBP11.77□□□□□ -0.53
LDLR-208ENST00000558518 BAATQ14032 418 aaPredicted RBP11.77□□□□□ -0.53
LDLR-208ENST00000558518 PDK3Q15120 406 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 OASLQ15646 514 aaKnown RBP11.77□□□□□ -0.53
LDLR-208ENST00000558518 FASTKD1Q53R41 847 aaKnown RBP11.77□□□□□ -0.53
LDLR-208ENST00000558518 LGSNQ5TDP6 509 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 PCGF5Q86SE9 256 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 TNS4Q8IZW8 715 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 NME8Q8N427 588 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 CISHQ9NSE2 258 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 RNF19AQ9NV58 838 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 CNTNAP2Q9UHC6 1331 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 STRCP1A6NGW2 1772 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 ZNF862O60290 1169 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 TM7SF2O76062 418 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 ENO3P13929 434 aaPredicted RBP11.77□□□□□ -0.53
LDLR-208ENST00000558518 FGFR3P22607 806 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 PRKCEQ02156 737 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 GK3PQ14409 553 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 Q3C1V9 767 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 CIAPIN1Q6FI81 312 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 PLEKHA7Q6IQ23 1121 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 DHDDSQ86SQ9 333 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 SP8Q8IXZ3 490 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 TTC16Q8NEE8 873 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 ZSCAN18Q8TBC5 510 aaPredicted RBP11.77□□□□□ -0.53
LDLR-208ENST00000558518 ALKBH8Q96BT7 664 aaKnown RBP11.77□□□□□ -0.53
LDLR-208ENST00000558518 ZDHHC15Q96MV8 337 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 TIPINQ9BVW5 301 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 STRA6Q9BX79 667 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 ZNF358Q9NW07 568 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 SOX13Q9UN79 622 aa11.77□□□□□ -0.53
LDLR-208ENST00000558518 ANKRD12Q6UB98 2062 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 TRAFD1O14545 582 aaPredicted RBP11.76□□□□□ -0.53
LDLR-208ENST00000558518 DKC1O60832 514 aaKnown RBP eCLIP11.76□□□□□ -0.53
LDLR-208ENST00000558518 VCLP18206 1134 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 RBL1P28749 1068 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 CDK7P50613 346 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 COPAP53621 1224 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 TBC1D25Q3MII6 688 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 TTC39BQ5VTQ0 682 aaPredicted RBP11.76□□□□□ -0.53
LDLR-208ENST00000558518 DPY19L2Q6NUT2 758 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 SLC26A11Q86WA9 606 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 TDRPQ86YL5 185 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 FOXP3Q9BZS1 431 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 TDRKHQ9Y2W6 561 aaKnown RBP11.76□□□□□ -0.53
LDLR-208ENST00000558518 RREB1Q92766 1687 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 MAGEB3O15480 346 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 DHX15O43143 795 aaKnown RBP11.76□□□□□ -0.53
LDLR-208ENST00000558518 TBC1D12O60347 775 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 CALB1P05937 261 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 CHRNA5P30532 468 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 PDK1Q15118 436 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 NRF1Q16656 503 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 ZACNQ401N2 412 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 DNAL1Q4LDG9 190 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 PPM1JQ5JR12 505 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 RC3H1Q5TC82 1133 aaKnown RBP11.76□□□□□ -0.53
LDLR-208ENST00000558518 ENOSF1Q7L5Y1 443 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 MPP5Q8N3R9 675 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 FAM156AQ8NDB6 213 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 NAT14Q8WUY8 206 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 PCDHGB4Q9UN71 923 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 DTNAQ9Y4J8 743 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 PCDHGB5Q9Y5G0 923 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 PCDHA10Q9Y5I2 948 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 MRPL42Q9Y6G3 142 aaKnown RBP11.76□□□□□ -0.53
LDLR-208ENST00000558518 SNCAIPQ9Y6H5 919 aa11.76□□□□□ -0.53
LDLR-208ENST00000558518 TTLL13PA6NNM8 815 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 A8MXQ7 604 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 LRCH4O75427 683 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 CSH1P0DML2 217 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 CSH2P0DML3 217 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 OSBPP22059 807 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 KDELR1P24390 212 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 MIPP30301 263 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 NUDT2P50583 147 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 FOLH1Q04609 750 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 TBL3Q12788 808 aaKnown RBP11.75□□□□□ -0.53
LDLR-208ENST00000558518 PDE1CQ14123 709 aaPredicted RBP11.75□□□□□ -0.53
LDLR-208ENST00000558518 MYBPC2Q14324 1141 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 TATDN1Q6P1N9 297 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 LCA5Q86VQ0 697 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 TMC2Q8TDI7 906 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 CLMNQ96JQ2 1002 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 MIS12Q9H081 205 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 SEMA6AQ9H2E6 1030 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 COPS7BQ9H9Q2 264 aaPredicted RBP11.75□□□□□ -0.53
LDLR-208ENST00000558518 ARHGEF4Q9NR80 690 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 STRIP2Q9ULQ0 834 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 M0QYV0 167 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 EXTL3O43909 919 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 PEX10O60683 326 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 SUPT3HO75486 399 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms