RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 EIF3DO15371 548 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP3-206ENST00000558157 CCNT2O60583 730 aaKnown RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 PGM3O95394 542 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 DHRS4L1P0CG22 281 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 ADRA1DP25100 572 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 MAPK4P31152 587 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 STIP1P31948 543 aaKnown RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 ICAM3P32942 547 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 TM4SF4P48230 202 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 CASP5P51878 434 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 NR1H2P55055 460 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 AQP4P55087 323 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 PSMC6P62333 389 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 OVGP1Q12889 678 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 CRHR2Q13324 411 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 GRB14Q14449 540 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 HIC1Q14526 733 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 KRT81Q14533 505 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 C17orf99Q6UX52 265 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 TMEM126BQ8IUX1 230 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 SLC15A3Q8IY34 581 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 ABRAQ8N0Z2 381 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 TRPC4APQ8TEL6 797 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 HSD17B14Q9BPX1 270 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 THTPAQ9BU02 230 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 MAK16Q9BXY0 300 aaKnown RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 NMUR2Q9GZQ4 415 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 ZFYVE28Q9HCC9 887 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 SAYSD1Q9NPB0 183 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 PFDN4Q9NQP4 134 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 WRAP73Q9P2S5 460 aaPredicted RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 TCEAL9Q9UHQ7 104 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 HBS1LQ9Y450 684 aaKnown RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 CCDC160A6NGH7 325 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 SLITRK3O94933 977 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 CD48P09326 243 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 MYL2P10916 166 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 CASP4P49662 377 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 ARL4CP56559 192 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 KRT76Q01546 638 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 SP2Q02086 613 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 FOLH1Q04609 750 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 PTP4A2Q12974 167 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 TMEM110Q86TL2 294 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 TPH2Q8IWU9 490 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 FBXO16Q8IX29 292 aaPredicted RBP11.32□□□□□ -0.6
USP3-206ENST00000558157 KCTD17Q8N5Z5 321 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 GDPD5Q8WTR4 605 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 NLRP4Q96MN2 994 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 LXNQ9BS40 222 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 NUP85Q9BW27 656 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 EIF2AQ9BY44 585 aaKnown RBP11.32□□□□□ -0.6
USP3-206ENST00000558157 SENP6Q9GZR1 1112 aaPredicted RBP11.32□□□□□ -0.6
USP3-206ENST00000558157 WWP1Q9H0M0 922 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 SOX13Q9UN79 622 aa11.32□□□□□ -0.6
USP3-206ENST00000558157 FAF1Q9UNN5 650 aaPredicted RBP11.32□□□□□ -0.6
USP3-206ENST00000558157 TTLL13PA6NNM8 815 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 ALOX15BO15296 676 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 USP1O94782 785 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 ZBED1O96006 694 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 KLRC2P26717 231 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 PHBP35232 272 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 FDFT1P37268 417 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 APLP1P51693 650 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 JAK3P52333 1124 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 COG7P83436 770 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 SP4Q02446 784 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 PRUNE1Q86TP1 453 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 ZNF410Q86VK4 478 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 BANPQ8N9N5 519 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 ATP11CQ8NB49 1132 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 CAPNS2Q96L46 248 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 OLFML3Q9NRN5 406 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 CREBZFQ9NS37 354 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 LZTS1Q9Y250 596 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 ZNF711Q9Y462 761 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 PCDHB13Q9Y5F0 798 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 WDR81Q562E7 1941 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 ZSWIM8A7E2V4 1837 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 LOXHD1Q8IVV2 1947 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 WDR64B1ANS9 1081 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 FOXN3O00409 490 aaPredicted RBP11.31□□□□□ -0.6
USP3-206ENST00000558157 SERPINB7O75635 380 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 UBA1P22314 1058 aaKnown RBP11.31□□□□□ -0.6
USP3-206ENST00000558157 NOGQ13253 232 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 APOFQ13790 326 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 MORF4L2Q15014 288 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 BCL2A1Q16548 175 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 DEFB115Q30KQ5 88 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 ZNF746Q6NUN9 644 aaPredicted RBP11.31□□□□□ -0.6
USP3-206ENST00000558157 ADGRD1Q6QNK2 874 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 ARMCX2Q7L311 632 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 TMC7Q7Z402 723 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 CATSPER1Q8NEC5 780 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 TCP10LQ8TDR4 215 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 FAM81BQ96LP2 452 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 TCHPQ9BT92 498 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 ZHX3Q9H4I2 956 aa11.31□□□□□ -0.6
USP3-206ENST00000558157 JPH1Q9HDC5 661 aaPredicted RBP11.31□□□□□ -0.6
USP3-206ENST00000558157 DNM3Q9UQ16 869 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms