RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RSRC1Q96IZ7 334 aaKnown RBP13.43□□□□□ -0.26
LDLR-207ENST00000558013 NUDCD1Q96RS6 583 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 MIS12Q9H081 205 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 BPTFQ12830 3046 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 TRIM49D1C9J1S8 452 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 GABBR2O75899 941 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 C1QAP02745 245 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 INHBAP08476 426 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 INSRRP14616 1297 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 ARF4P18085 180 aaPredicted RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 PAX7P23759 505 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 CPA2P48052 419 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 YWHAZP63104 245 aaKnown RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 SURF1Q15526 300 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 TRMT10BQ6PF06 316 aaKnown RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 RFX8Q6ZV50 586 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 BZW1Q7L1Q6 419 aaKnown RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 MPP5Q8N3R9 675 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 PCDH19Q8TAB3 1148 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 SLC44A1Q8WWI5 657 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 FAM167AQ96KS9 214 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 RSAD1Q9HA92 442 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 GPRC5DQ9NZD1 345 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 SLC17A6Q9P2U8 582 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 GINS2Q9Y248 185 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 NME7Q9Y5B8 376 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 GPD1P21695 349 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 SESN3P58005 492 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 RASA2Q15283 850 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 SLC45A4Q5BKX6 768 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 PPP1R26Q5T8A7 1209 aaPredicted RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 FYB2Q5VWT5 728 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 CAND1Q86VP6 1230 aaKnown RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 CLEC4CQ8WTT0 213 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 RNF157Q96PX1 679 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 RAB3IPQ96QF0 476 aaPredicted RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 TMEM120AQ9BXJ8 343 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 CADM1Q9BY67 442 aaKnown RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 PDZD7Q9H5P4 517 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 ASNSD1Q9NWL6 643 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 MARCOQ9UEW3 520 aaPredicted RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 TNFSF13BQ9Y275 285 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 MFHAS1Q9Y4C4 1052 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 IKBKGQ9Y6K9 419 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 A0A1B0GUA9 196 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 PRPSAP2O60256 369 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 LGR5O75473 907 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 KITP10721 976 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 ABL2P42684 1182 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 KRT81Q14533 505 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 PARP6Q2NL67 630 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 KHDC1Q4VXA5 237 aaKnown RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 MDH1BQ5I0G3 518 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 ACOT1Q86TX2 421 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 ALYREFQ86V81 257 aaKnown RBP13.42□□□□□ -0.26
LDLR-207ENST00000558013 FBXO27Q8NI29 283 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 PGLYRP2Q96PD5 576 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 C2orf40Q9H1Z8 148 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 RNPEPL1Q9HAU8 725 aa13.42□□□□□ -0.26
LDLR-207ENST00000558013 ENDOD1O94919 500 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 C22orf31O95567 290 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 ZNF286BP0CG31 522 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 TPBGLP0DKB5 382 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 GABRB2P47870 512 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 NEK3P51956 506 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 IRX4P78413 519 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 HSF5Q4G112 596 aaPredicted RBP13.41□□□□□ -0.26
LDLR-207ENST00000558013 CCDC62Q6P9F0 684 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 SRPK1Q96SB4 655 aaKnown RBP13.41□□□□□ -0.26
LDLR-207ENST00000558013 CNPY3Q9BT09 278 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 VPS11Q9H270 941 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 RBPJLQ9UBG7 517 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 AKT3Q9Y243 479 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 ANK1P16157 1881 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 METTL18O95568 372 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 DLDP09622 509 aaKnown RBP13.41□□□□□ -0.26
LDLR-207ENST00000558013 TROVE2P10155 538 aaKnown RBP eCLIP13.41□□□□□ -0.26
LDLR-207ENST00000558013 GNAZP19086 355 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 CRADDP78560 199 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 GBE1Q04446 702 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 NOL9Q5SY16 702 aaKnown RBP13.41□□□□□ -0.26
LDLR-207ENST00000558013 TTC30AQ86WT1 665 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 FAM172AQ8WUF8 416 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 KHSRPQ92945 711 aaKnown RBP eCLIP13.41□□□□□ -0.26
LDLR-207ENST00000558013 MRPL45Q9BRJ2 306 aaKnown RBP13.41□□□□□ -0.26
LDLR-207ENST00000558013 TRIM55Q9BYV6 548 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 C20orf27Q9GZN8 174 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 WDR35Q9P2L0 1181 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 ZC3H7BQ9UGR2 993 aaKnown RBP13.41□□□□□ -0.26
LDLR-207ENST00000558013 SUFUQ9UMX1 484 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 TTLL3Q9Y4R7 772 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 HES2Q9Y543 173 aa13.41□□□□□ -0.26
LDLR-207ENST00000558013 TM9SF1O15321 606 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 DHRS4L1P0CG22 281 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 MYL2P10916 166 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 GMPRP36959 345 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 ARFIP2P53365 341 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 BCAR1P56945 870 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 TMEM62Q0P6H9 643 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms