RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CASC4Q6P4E1 433 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 RELL1Q8IUW5 271 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 SCUBE1Q8IWY4 988 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 SMC1BQ8NDV3 1235 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 NMD3Q96D46 503 aaKnown RBP12.84□□□□□ -0.35
LDLR-205ENST00000557933 PGBD4Q96DM1 585 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 TWNKQ96RR1 684 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 PEBP4Q96S96 227 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 UBE2OQ9C0C9 1292 aaKnown RBP12.84□□□□□ -0.35
LDLR-205ENST00000557933 RNF146Q9NTX7 359 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 ETAA1Q9NY74 926 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 LNPEPQ9UIQ6 1025 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 ASB3Q9Y575 518 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 TRAFD1O14545 582 aaPredicted RBP12.84□□□□□ -0.35
LDLR-205ENST00000557933 LIN7AO14910 233 aaPredicted RBP12.84□□□□□ -0.35
LDLR-205ENST00000557933 ITGAVP06756 1048 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 KDELR1P24390 212 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 RANBP1P43487 201 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 PHKA2P46019 1235 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 C1QBPQ07021 282 aaKnown RBP12.84□□□□□ -0.35
LDLR-205ENST00000557933 MCL1Q07820 350 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 OLIG2Q13516 323 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 SPDYE2Q495Y8 402 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 ZC3H12AQ5D1E8 599 aaKnown RBP12.84□□□□□ -0.35
LDLR-205ENST00000557933 FAM43BQ6ZT52 329 aaPredicted RBP12.84□□□□□ -0.35
LDLR-205ENST00000557933 NUDCD3Q8IVD9 361 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 APOPT1Q96IL0 206 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 SAR1AQ9NR31 198 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 ZNF358Q9NW07 568 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 I3L4J1 428 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 PEX2P28328 305 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 CDC16Q13042 620 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 PSMD6Q15008 389 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 EGFL6Q8IUX8 553 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 RPAP3Q9H6T3 665 aaPredicted RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 TLE6Q9H808 572 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 NDE1Q9NXR1 346 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 STX18Q9P2W9 335 aaKnown RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 ZC3H7BQ9UGR2 993 aaKnown RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 HERC5Q9UII4 1024 aaKnown RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 SYNPO2Q9UMS6 1093 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 LAMA2P24043 3122 aaKnown RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 CCDC78A2IDD5 438 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 CCDC160A6NGH7 325 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 MCF2LO15068 1137 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 NPTXRO95502 500 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 ERBB2P04626 1255 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 RBL1P28749 1068 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 SERPINB6P35237 376 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 ATXN1P54253 815 aaKnown RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 SLC25A11Q02978 314 aaKnown RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 BTKQ06187 659 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 KLHL38Q2WGJ6 581 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 FAM219BQ5XKK7 198 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 SNRNP48Q6IEG0 339 aaKnown RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 RNF111Q6ZNA4 994 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 ATG14Q6ZNE5 492 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 ENOSF1Q7L5Y1 443 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 GALNT15Q8N3T1 639 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 TMEM35BQ8NCS4 154 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 NLGN2Q8NFZ4 835 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 ADAM32Q8TC27 787 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 TRAPPC12Q8WVT3 735 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 E2F7Q96AV8 911 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 OXCT2Q9BYC2 517 aaPredicted RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 PHACTR1Q9C0D0 580 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 VPS11Q9H270 941 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 ST6GALNAC4Q9H4F1 302 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 JPH1Q9HDC5 661 aaPredicted RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 NGRNQ9NPE2 291 aaKnown RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 CLIC5Q9NZA1 410 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 ARHGAP28Q9P2N2 729 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 MRPL42Q9Y6G3 142 aaKnown RBP12.83□□□□□ -0.36
LDLR-205ENST00000557933 CNTNAP1P78357 1384 aa12.83□□□□□ -0.36
LDLR-205ENST00000557933 B4GALT5O43286 388 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 NCF2P19878 526 aaPredicted RBP12.82□□□□□ -0.36
LDLR-205ENST00000557933 KRT76Q01546 638 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 CXCL9Q07325 125 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 AP1B1Q10567 949 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 DLG1Q12959 904 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 TRPC3Q13507 836 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 SFT2D3Q587I9 215 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 FAM102AQ5T9C2 384 aaPredicted RBP12.82□□□□□ -0.36
LDLR-205ENST00000557933 FAM83AQ86UY5 434 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 FAM160B2Q86V87 743 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 SAMD3Q8N6K7 520 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 NKD2Q969F2 451 aaPredicted RBP12.82□□□□□ -0.36
LDLR-205ENST00000557933 EPAS1Q99814 870 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 IQANK1A0A1B0GTG1 560 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 PROCP04070 461 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 CALRP27797 417 aaKnown RBP12.82□□□□□ -0.36
LDLR-205ENST00000557933 JAK3P52333 1124 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 AQP4P55087 323 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 ROR2Q01974 943 aaKnown RBP12.82□□□□□ -0.36
LDLR-205ENST00000557933 LAMB3Q13751 1172 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 PPM1JQ5JR12 505 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 RASSF3Q86WH2 238 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 ZNF677Q86XU0 584 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 LPIN3Q9BQK8 851 aa12.82□□□□□ -0.36
LDLR-205ENST00000557933 MTO1Q9Y2Z2 717 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 137.1 ms