RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 A0A1W2PQD8 194 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 TBC1D3BA6NDS4 549 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 TRIM66O15016 1216 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 HOXC11O43248 304 aaPredicted RBP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 SYPP08247 313 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 PDGFRBP09619 1106 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 TMEM191BP0C7N4 346 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 WARSP23381 471 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 RBP5P82980 135 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 GAD2Q05329 585 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 GRIK2Q13002 908 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 HNRNPDQ14103 355 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 PLEKHG6Q3KR16 790 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 MDH1BQ5I0G3 518 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 C10orf76Q5T2E6 689 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 L1TD1Q5T7N2 865 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 USP49Q70CQ1 688 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 DDX42Q86XP3 938 aaKnown RBP eCLIP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 BBS7Q8IWZ6 715 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 NOC3LQ8WTT2 800 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 CACTINQ8WUQ7 758 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 HNRNPLLQ8WVV9 542 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 HPDLQ96IR7 371 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 C8orf48Q96LL4 319 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 CEP295NLQ96MC4 621 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 KIF2CQ99661 725 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 MRPL45Q9BRJ2 306 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 TRIM9Q9C026 710 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 DPEP3Q9H4B8 488 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 MRPL44Q9H9J2 332 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 RAD54BQ9Y620 910 aa8.7□□□□□ -1.02
CCDC88C-214ENST00000557507 E2F8A0AVK6 867 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 CLDN5O00501 218 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 COCHO43405 550 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 CBFA2T3O75081 653 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 GCNT3O95395 438 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 GARTP22102 1010 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 MAOBP27338 520 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 NTSR1P30989 418 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 PPP3CCP48454 512 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 SLC14A1Q13336 389 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 MAPRE1Q15691 268 aaKnown RBP8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 DPH6Q7L8W6 267 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 TRMT11Q7Z4G4 463 aaKnown RBP8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 SLCO6A1Q86UG4 719 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 TMEM25Q86YD3 366 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 MARCH9Q86YJ5 346 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 RGL4Q8IZJ4 473 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 KRI1Q8N9T8 703 aaKnown RBP8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 MYCBPAPQ8TBZ2 947 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 IPO4Q8TEX9 1081 aaKnown RBP8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 DNAJC19Q96DA6 116 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 CRELD1Q96HD1 420 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 INTS4Q96HW7 963 aaKnown RBP8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 ANKRD36BP1Q96IX9 119 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 LRIG1Q96JA1 1093 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 SLITRK1Q96PX8 696 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 ACCSQ96QU6 501 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 ZNF518BQ9C0D4 1074 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 PCIF1Q9H4Z3 704 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 INTS13Q9NVM9 706 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 EHD2Q9NZN4 543 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 TBC1D14Q9P2M4 693 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 DEC1Q9P2X7 70 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 PCOLCE2Q9UKZ9 415 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 EXOC7Q9UPT5 735 aa8.69□□□□□ -1.02
CCDC88C-214ENST00000557507 COL5A1P20908 1838 aaPredicted RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 KALRNO60229 2985 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 PRRT4C9JH25 899 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 ZNF217O75362 1048 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 LDHAP00338 332 aaKnown RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 IRF1P10914 325 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 LONP1P36776 959 aaKnown RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 MYO1EQ12965 1108 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 ANO4Q32M45 955 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 TDRD10Q5VZ19 366 aaKnown RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 BTBD8Q5XKL5 378 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 TOGARAM2Q6ZUX3 1019 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 HS2ST1Q7LGA3 356 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 GLRX5Q86SX6 157 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 CBWD2Q8IUF1 395 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 CHPFQ8IZ52 775 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 GPD1LQ8N335 351 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 SPRYD3Q8NCJ5 442 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 SCAMP5Q8TAC9 235 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 BAHD1Q8TBE0 780 aaPredicted RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 KCNV2Q8TDN2 545 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 FBXO32Q969P5 355 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 COL26A1Q96A83 441 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 OTUB2Q96DC9 234 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 ZNF419Q96HQ0 510 aaPredicted RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 EPSTI1Q96J88 318 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 MRGPRX1Q96LB2 322 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 MMS19Q96T76 1030 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 GABRG3Q99928 467 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 ELOVL4Q9GZR5 314 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 CCSER2Q9H7U1 834 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 IL21RQ9HBE5 538 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 SCUBE2Q9NQ36 999 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 SPHK2Q9NRA0 654 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms