RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RNF38Q9H0F5 515 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 NMUR1Q9HB89 426 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 CNGB3Q9NQW8 809 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 ST7Q9NRC1 585 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 WNT16Q9UBV4 365 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 PCDHGC3Q9UN70 934 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 OBSL1O75147 1896 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 TECTAO75443 2155 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 A0A1W2PQC6 194 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 CHADO15335 359 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 RALAP11233 206 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 RARGP13631 454 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 CYP11B1P15538 503 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 TCF3P15923 654 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 SOX5P35711 763 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 STAT1P42224 750 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 UBASH3AP57075 661 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 PLCB2Q00722 1185 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 USP4Q13107 963 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 ZNF77Q15935 545 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 ARHGAP29Q52LW3 1261 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 DENND4CQ5VZ89 1909 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 PM20D1Q6GTS8 502 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 CC2D1AQ6P1N0 951 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-228ENST00000557302 CACNA2D4Q7Z3S7 1137 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 SCD5Q86SK9 330 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 TADA2BQ86TJ2 420 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 SH3RF2Q8TEC5 729 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 NUP210Q8TEM1 1887 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-228ENST00000557302 STK32AQ8WU08 396 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 DNASE1L2Q92874 299 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 ASIC4Q96FT7 647 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 PDCL3Q9H2J4 239 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 CYLDQ9NQC7 956 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.28□□□□□ -0.12
SHMT2-228ENST00000557302 OSER1Q9NX31 292 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 SMPD4Q9NXE4 827 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 CLIC5Q9NZA1 410 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 CA14Q9ULX7 337 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 CEP83Q9Y592 693 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 CPQQ9Y646 472 aa14.28□□□□□ -0.12
SHMT2-228ENST00000557302 FAM86C2PA6NEL3 165 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 PIK3R2O00459 728 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 GPR37L1O60883 481 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 GFPT2O94808 682 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 FBXO21O94952 628 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 ACADSBP45954 432 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 YWHAGP61981 247 aaKnown RBP eCLIP14.27□□□□□ -0.13
SHMT2-228ENST00000557302 PDCLQ13371 301 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 MTF1Q14872 753 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 NR1I3Q14994 352 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 TMEM31Q5JXX7 168 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 C10orf120Q5SQS8 335 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 DDX42Q86XP3 938 aaKnown RBP eCLIP14.27□□□□□ -0.13
SHMT2-228ENST00000557302 PASD1Q8IV76 773 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 SIX5Q8N196 739 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 SCML4Q8N228 414 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 RNF214Q8ND24 703 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 NOX5Q96PH1 765 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 CDK5RAP1Q96SZ6 601 aaKnown RBP14.27□□□□□ -0.13
SHMT2-228ENST00000557302 LHX5Q9H2C1 402 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 ARHGEF3Q9NR81 526 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 ANAPC1Q9H1A4 1944 aa14.27□□□□□ -0.13
SHMT2-228ENST00000557302 LEFTY2O00292 366 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 GABBR2O75899 941 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 TBX18O95935 607 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 TPM3P06753 285 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 ATP5C1P36542 298 aaKnown RBP14.26□□□□□ -0.13
SHMT2-228ENST00000557302 RPL34P49207 117 aaKnown RBP14.26□□□□□ -0.13
SHMT2-228ENST00000557302 DAOAP59103 153 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 TAF3Q5VWG9 929 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 BTBD8Q5XKL5 378 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 KLHDC10Q6PID8 442 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 RSRC2Q7L4I2 434 aaKnown RBP14.26□□□□□ -0.13
SHMT2-228ENST00000557302 NOP9Q86U38 636 aaKnown RBP14.26□□□□□ -0.13
SHMT2-228ENST00000557302 ZNF677Q86XU0 584 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 ZNF276Q8N554 614 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 C1orf131Q8NDD1 294 aaKnown RBP14.26□□□□□ -0.13
SHMT2-228ENST00000557302 RIN3Q8TB24 985 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 CSGALNACT1Q8TDX6 532 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 EPS8L1Q8TE68 723 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 IRGQQ8WZA9 623 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 NDRG1Q92597 394 aaKnown RBP14.26□□□□□ -0.13
SHMT2-228ENST00000557302 ZFYVE19Q96K21 471 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 SLC4A5Q9BY07 1137 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 MIS12Q9H081 205 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 MFSD1Q9H3U5 465 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 C11orf16Q9NQ32 467 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 TRPV5Q9NQA5 729 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 IFNKQ9P0W0 207 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 CFAP97Q9P2B7 532 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 CYTH4Q9UIA0 394 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 DNMT3LQ9UJW3 386 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 MYO16Q9Y6X6 1858 aa14.26□□□□□ -0.13
SHMT2-228ENST00000557302 WDFY4Q6ZS81 3184 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 KRBA1A5PL33 1030 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 YJEFN3A6XGL0 299 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 PRR33A8MZF0 331 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 E5RJQ4 531 aa14.25□□□□□ -0.13
SHMT2-228ENST00000557302 E7ENQ6 273 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms