RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 AP4M1O00189 453 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 PSMD9O00233 223 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 SPRY2O43597 315 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 ARP10275 920 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 MST1P26927 711 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 FHL3Q13643 280 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 RNASE12Q5GAN4 147 aaKnown RBP5.46□□□□□ -1.54
SCFD1-221ENST00000556534 PCID2Q5JVF3 399 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 SYCP2LQ5T4T6 812 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 XRRA1Q6P2D8 792 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 MTHFD1LQ6UB35 978 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 KIRREL2Q6UWL6 708 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 SRLQ86TD4 932 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 MBD3L2Q8NHZ7 208 aaPredicted RBP5.46□□□□□ -1.54
SCFD1-221ENST00000556534 DEPTORQ8TB45 409 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 KIAA1191Q96A73 305 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 SLC39A13Q96H72 371 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 ZNF764Q96H86 408 aaPredicted RBP5.46□□□□□ -1.54
SCFD1-221ENST00000556534 HIST1H2AAQ96QV6 131 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 CRAMP1Q96RY5 1269 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 ELAC2Q9BQ52 826 aaKnown RBP5.46□□□□□ -1.54
SCFD1-221ENST00000556534 SLC25A32Q9H2D1 315 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 CERS4Q9HA82 394 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 MAN2B2Q9Y2E5 1009 aa5.46□□□□□ -1.54
SCFD1-221ENST00000556534 COL15A1P39059 1388 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 EXOC5O00471 708 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 PDE8BO95263 885 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 NDST3O95803 873 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 ATICP31939 592 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 MCM5P33992 734 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 UBE4AQ14139 1066 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 CLCA4Q14CN2 919 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 MPEG1Q2M385 716 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 ARL13BQ3SXY8 428 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 USP17L6PQ6QN14 398 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 NAPRTQ6XQN6 538 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 KIAA0408Q6ZU52 694 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 PTCHD4Q6ZW05 846 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 RAB11FIP4Q86YS3 637 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 SLC27A6Q9Y2P4 619 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 PCDHGB2Q9Y5G2 931 aa5.45□□□□□ -1.54
SCFD1-221ENST00000556534 FAM234BA2RU67 622 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 A8MVJ9 347 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 TARM1B6A8C7 271 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 JTBO76095 146 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 C1RP00736 705 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 IFIT2P09913 472 aaKnown RBP5.44□□□□□ -1.54
SCFD1-221ENST00000556534 EGR1P18146 543 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 FBLP22087 321 aaKnown RBP5.44□□□□□ -1.54
SCFD1-221ENST00000556534 SERPINB3P29508 390 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 SLC5A2P31639 672 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 SUMO2P61956 95 aaKnown RBP5.44□□□□□ -1.54
SCFD1-221ENST00000556534 DGKKQ5KSL6 1271 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 L1TD1Q5T7N2 865 aaKnown RBP5.44□□□□□ -1.54
SCFD1-221ENST00000556534 FCRLBQ6BAA4 426 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 ABLIM2Q6H8Q1 611 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 ZNF788Q6ZQV5 615 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 SFTPA1Q8IWL2 248 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 CCDC28AQ8IWP9 274 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 TXLNBQ8N3L3 684 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 SIRT6Q8N6T7 355 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 C11orf44Q8N8P7 122 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 CYP2W1Q8TAV3 490 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 NELL1Q92832 810 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 TNIP3Q96KP6 325 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 MMS19Q96T76 1030 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 EIF2AQ9BY44 585 aaKnown RBP5.44□□□□□ -1.54
SCFD1-221ENST00000556534 ZCWPW1Q9H0M4 648 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 ZBTB26Q9HCK0 441 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 SH3BP4Q9P0V3 963 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 LPAR3Q9UBY5 353 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 AMFRQ9UKV5 643 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 AOX1Q06278 1338 aa5.44□□□□□ -1.54
SCFD1-221ENST00000556534 WIPF3A6NGB9 483 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 CES2O00748 559 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 CBFA2T3O75081 653 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 RBMXL2O75526 392 aaKnown RBP5.43□□□□□ -1.54
SCFD1-221ENST00000556534 FGAP02671 866 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 MYCLP12524 364 aaPredicted RBP5.43□□□□□ -1.54
SCFD1-221ENST00000556534 EEF1GP26641 437 aaKnown RBP5.43□□□□□ -1.54
SCFD1-221ENST00000556534 HSPA7P48741 367 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 DIO1P49895 249 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 TFF2Q03403 129 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 GPS1Q13098 491 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 SLC5A9Q2M3M2 681 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 TBC1D25Q3MII6 688 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 FAXCQ5TGI0 409 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 RAP1GAP2Q684P5 730 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 MRNIPQ6NTE8 343 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 CLEC9AQ6UXN8 241 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 TRIM72Q6ZMU5 477 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 FAM186BQ8IYM0 893 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 LINC01465Q8N7H1 131 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 GLIS1Q8NBF1 620 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 SNX27Q96L92 541 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 SNX18Q96RF0 628 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 WDR24Q96S15 920 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 CIPCQ9C0C6 399 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 PCDHAC1Q9H158 963 aa5.43□□□□□ -1.54
SCFD1-221ENST00000556534 NLRC4Q9NPP4 1024 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms