RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 STK31Q9BXU1 1019 aa6.14□□□□□ -1.43
PRPF39-209ENST00000556353 DNMT3BQ9UBC3 853 aaKnown RBP6.14□□□□□ -1.43
PRPF39-209ENST00000556353 AFF4Q9UHB7 1163 aaKnown RBP6.14□□□□□ -1.43
PRPF39-209ENST00000556353 BTBD19C9JJ37 291 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 TMEM232C9JQI7 657 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 H7C4K7 107 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 PPEF2O14830 753 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 BCAR3O75815 825 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 BMP15O95972 392 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 TOP3BO95985 862 aaKnown RBP6.13□□□□□ -1.43
PRPF39-209ENST00000556353 S100BP04271 92 aaPredicted RBP6.13□□□□□ -1.43
PRPF39-209ENST00000556353 ZKSCAN1P17029 563 aaPredicted RBP6.13□□□□□ -1.43
PRPF39-209ENST00000556353 CACNB3P54284 484 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 ZNF268Q14587 947 aaPredicted RBP6.13□□□□□ -1.43
PRPF39-209ENST00000556353 LRRC41Q15345 812 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 TRIP6Q15654 476 aaKnown RBP6.13□□□□□ -1.43
PRPF39-209ENST00000556353 NFE2Q16621 373 aaPredicted RBP6.13□□□□□ -1.43
PRPF39-209ENST00000556353 C4orf46Q504U0 113 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 NXNQ6DKJ4 435 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 ZNF813Q6ZN06 617 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 PRSS3P2Q8NHM4 247 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 CCDC17Q96LX7 622 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 ZNF48Q96MX3 618 aaPredicted RBP6.13□□□□□ -1.43
PRPF39-209ENST00000556353 VPS16Q9H269 839 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 SNX15Q9NRS6 342 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 ASIC5Q9NY37 505 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 KLHL13Q9P2N7 655 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 HDAC9Q9UKV0 1011 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 CACNA1IQ9P0X4 2223 aa6.13□□□□□ -1.43
PRPF39-209ENST00000556353 CD3EAPO15446 510 aaKnown RBP6.12□□□□□ -1.43
PRPF39-209ENST00000556353 RRP9O43818 475 aaKnown RBP6.12□□□□□ -1.43
PRPF39-209ENST00000556353 MT-CO3P00414 261 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 IGKV2-30P06310 120 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 IL1R2P27930 398 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 PTDSS1P48651 473 aaKnown RBP6.12□□□□□ -1.43
PRPF39-209ENST00000556353 LMAN2Q12907 356 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 CNGA2Q16280 664 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 PXDC1Q5TGL8 231 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 KCTD20Q7Z5Y7 419 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 TCEAL8Q8IYN2 117 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 MAGEB6Q8N7X4 407 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 ELOVL5Q9NYP7 299 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 LPAR3Q9UBY5 353 aa6.12□□□□□ -1.43
PRPF39-209ENST00000556353 SCAF8Q9UPN6 1271 aaKnown RBP6.12□□□□□ -1.43
PRPF39-209ENST00000556353 TSPOAP1O95153 1857 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 DIP2BQ9P265 1576 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 DSCR3O14972 297 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 CREB1P16220 341 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 ITGB6P18564 788 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 PLCD1P51178 756 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 COPB1P53618 953 aaKnown RBP6.11□□□□□ -1.43
PRPF39-209ENST00000556353 ITGA8P53708 1063 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 TIRAPP58753 221 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 ARHGEF7Q14155 803 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 C3orf38Q5JPI3 329 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 SMCR8Q8TEV9 937 aaPredicted RBP6.11□□□□□ -1.43
PRPF39-209ENST00000556353 EFHD1Q9BUP0 239 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 LRRC27Q9C0I9 530 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 WDR26Q9H7D7 661 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 TRIM36Q9NQ86 728 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 OGDHLQ9ULD0 1010 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 EID1Q9Y6B2 187 aa6.11□□□□□ -1.43
PRPF39-209ENST00000556353 PPRC1Q5VV67 1664 aaKnown RBP6.1□□□□□ -1.43
PRPF39-209ENST00000556353 E5RJQ4 531 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 TMPRSS11DO60235 418 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 PIAS2O75928 621 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 ATP5F1P24539 256 aaPredicted RBP6.1□□□□□ -1.43
PRPF39-209ENST00000556353 DIO1P49895 249 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 PGDP52209 483 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 RPS16P62249 146 aaKnown RBP6.1□□□□□ -1.43
PRPF39-209ENST00000556353 TIAL1Q01085 375 aaKnown RBP eCLIP6.1□□□□□ -1.439e-7■■■■□ 23.8
PRPF39-209ENST00000556353 SLC29A2Q14542 456 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 NPY5RQ15761 445 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 Q4G0T1 1027 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 TMEM63BQ5T3F8 832 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 RNF220Q5VTB9 566 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 TMEM65Q6PI78 240 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 C9orf106Q8NAJ2 232 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 LRTOMTQ8WZ04 291 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 ZBTB9Q96C00 473 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 CTHRC1Q96CG8 243 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 ZBTB45Q96K62 511 aaPredicted RBP6.1□□□□□ -1.43
PRPF39-209ENST00000556353 SPRTNQ9H040 489 aaPredicted RBP6.1□□□□□ -1.43
PRPF39-209ENST00000556353 DHX36Q9H2U1 1008 aaKnown RBP6.1□□□□□ -1.43
PRPF39-209ENST00000556353 MGAT4CQ9UBM8 478 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 TCEAL9Q9UHQ7 104 aa6.1□□□□□ -1.43
PRPF39-209ENST00000556353 PRG4Q92954 1404 aaPredicted RBP6.09□□□□□ -1.43
PRPF39-209ENST00000556353 A6NNZ2 444 aa6.09□□□□□ -1.43
PRPF39-209ENST00000556353 SPRY2O43597 315 aa6.09□□□□□ -1.43
PRPF39-209ENST00000556353 RNF8O76064 485 aa6.09□□□□□ -1.43
PRPF39-209ENST00000556353 A1BGP04217 495 aa6.09□□□□□ -1.43
PRPF39-209ENST00000556353 HGFP14210 728 aa6.09□□□□□ -1.43
PRPF39-209ENST00000556353 FMO1Q01740 532 aa6.09□□□□□ -1.43
PRPF39-209ENST00000556353 POLD3Q15054 466 aaPredicted RBP6.09□□□□□ -1.43
PRPF39-209ENST00000556353 RABEP1Q15276 862 aa6.09□□□□□ -1.43
PRPF39-209ENST00000556353 ZNF750Q32MQ0 723 aa6.09□□□□□ -1.43
PRPF39-209ENST00000556353 MEX3CQ5U5Q3 659 aaKnown RBP6.09□□□□□ -1.43
PRPF39-209ENST00000556353 CCDC149Q6ZUS6 474 aa6.09□□□□□ -1.43
PRPF39-209ENST00000556353 NGDNQ8NEJ9 315 aaKnown RBP6.09□□□□□ -1.43
PRPF39-209ENST00000556353 JDP2Q8WYK2 163 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms