RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 MAML1Q92585 1016 aa4.65□□□□□ -1.67
SCFD1-216ENST00000555550 FAM118BQ9BPY3 351 aa4.65□□□□□ -1.67
SCFD1-216ENST00000555550 C17orf80Q9BSJ5 609 aa4.65□□□□□ -1.67
SCFD1-216ENST00000555550 GOLGA6AQ9NYA3 693 aa4.65□□□□□ -1.67
SCFD1-216ENST00000555550 L1RE1Q9UN81 338 aa4.65□□□□□ -1.67
SCFD1-216ENST00000555550 USP22Q9UPT9 525 aa4.65□□□□□ -1.67
SCFD1-216ENST00000555550 FAM90A10PA6NDY2 464 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 MBD3L4A6NDZ8 208 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 MBD3L3A6NE82 208 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 VSTM5A8MXK1 200 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 ISM1B1AKI9 464 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 CES2O00748 559 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 TSPAN6O43657 245 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 MGEA5O60502 916 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 ALDH5A1P51649 535 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 SUMO2P61956 95 aaKnown RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 CNGA2Q16280 664 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 KIAA0753Q2KHM9 967 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 LEXMQ3ZCV2 418 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 CERKLQ49MI3 558 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 DARS2Q6PI48 645 aaKnown RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 MTHFD1LQ6UB35 978 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 KIRREL2Q6UWL6 708 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 SIRT6Q8N6T7 355 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 RBMXL3Q8N7X1 1067 aaKnown RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 LRTOMTQ8WZ04 291 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 LENG8Q96PV6 779 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 CIPCQ9C0C6 399 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 LRRC27Q9C0I9 530 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 STK32BQ9NY57 414 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 AFF4Q9UHB7 1163 aaKnown RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 DDX20Q9UHI6 824 aaKnown RBP4.64□□□□□ -1.67
SCFD1-216ENST00000555550 CDY1Q9Y6F8 540 aa4.64□□□□□ -1.67
SCFD1-216ENST00000555550 LOC102723971A0A1B0GUV8 181 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 TRIM43BA6NCK2 446 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 A6NNZ2 444 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 H7C1Q1 480 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 H7C4K7 107 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 DSCR3O14972 297 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 CYP19A1P11511 503 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-216ENST00000555550 FPR3P25089 353 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 KLRC1P26715 233 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 HTRA4P83105 476 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-216ENST00000555550 ZNF268Q14587 947 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-216ENST00000555550 GFOD2Q3B7J2 385 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 C10orf25Q5T742 122 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 WDR75Q8IWA0 830 aaKnown RBP4.63□□□□□ -1.67
SCFD1-216ENST00000555550 FAM156AQ8NDB6 213 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 SMCR8Q8TEV9 937 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-216ENST00000555550 TRIM43Q96BQ3 446 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-216ENST00000555550 PRR25Q96S07 402 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 EFHD1Q9BUP0 239 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 ZNF287Q9HBT7 754 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 AMFRQ9UKV5 643 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 GABRQQ9UN88 632 aa4.63□□□□□ -1.67
SCFD1-216ENST00000555550 DRG1Q9Y295 367 aaKnown RBP4.63□□□□□ -1.67
SCFD1-216ENST00000555550 FRMPD2Q68DX3 1309 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-216ENST00000555550 TCRBV5S1A1TA0A578 114 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 UBE2Q2LH0YL09 131 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 RAB27BO00194 218 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 GOLIM4O00461 696 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 CCP110O43303 1012 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 FRS3O43559 492 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 TJP3O95049 919 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 EPHA3P29320 983 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 PTDSS1P48651 473 aaKnown RBP4.62□□□□□ -1.67
SCFD1-216ENST00000555550 HTR6P50406 440 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 RENBPP51606 427 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 BCAT1P54687 386 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 RPS16P62249 146 aaKnown RBP4.62□□□□□ -1.67
SCFD1-216ENST00000555550 ARHGEF7Q14155 803 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 SLC29A2Q14542 456 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 POLD3Q15054 466 aaPredicted RBP4.62□□□□□ -1.67
SCFD1-216ENST00000555550 CYP1B1Q16678 543 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 MEX3CQ5U5Q3 659 aaKnown RBP4.62□□□□□ -1.67
SCFD1-216ENST00000555550 KCTD20Q7Z5Y7 419 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 SRGAP1Q7Z6B7 1085 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 MICU3Q86XE3 530 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 RAB11FIP4Q86YS3 637 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 NMD3Q96D46 503 aaKnown RBP4.62□□□□□ -1.67
SCFD1-216ENST00000555550 MMS19Q96T76 1030 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 THAP7Q9BT49 309 aaPredicted RBP4.62□□□□□ -1.67
SCFD1-216ENST00000555550 XPNPEP3Q9NQH7 507 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 ITGB1BP2Q9UKP3 347 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 PROCRQ9UNN8 238 aa4.62□□□□□ -1.67
SCFD1-216ENST00000555550 H3BNX3 289 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 TPP1O14773 563 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 PMPCBO75439 489 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 GCATO75600 419 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 PIAS2O75928 621 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 USP1O94782 785 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 CHRM5P08912 532 aaPredicted RBP4.61□□□□□ -1.67
SCFD1-216ENST00000555550 MYCLP12524 364 aaPredicted RBP4.61□□□□□ -1.67
SCFD1-216ENST00000555550 MYF5P13349 255 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 ATF3P18847 181 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 GKP32189 559 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 FAM193AP78312 1265 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 FMO1Q01740 532 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 GHRHRQ02643 423 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 STK3Q13188 491 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms