RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 ITGB1BP2Q9UKP3 347 aa3.98□□□□□ -1.77
VRK1-202ENST00000553683 PCDHGB6Q9Y5F9 930 aa3.98□□□□□ -1.77
VRK1-202ENST00000553683 SNX13Q9Y5W8 968 aa3.98□□□□□ -1.77
VRK1-202ENST00000553683 TISP43B9A030 160 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 F8W8V4 182 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 PQBP1O60828 265 aaKnown RBP3.97□□□□□ -1.77
VRK1-202ENST00000553683 CAND2O75155 1236 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 MT-CO3P00414 261 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 CREB1P16220 341 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 SLC5A2P31639 672 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 COPAP53621 1224 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 SRSF4Q08170 494 aaKnown RBP3.97□□□□□ -1.77
VRK1-202ENST00000553683 RNASE12Q5GAN4 147 aaKnown RBP3.97□□□□□ -1.77
VRK1-202ENST00000553683 CCDC181Q5TID7 509 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 MANEALQ5VSG8 457 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 CCSAPQ6IQ19 270 aaPredicted RBP3.97□□□□□ -1.77
VRK1-202ENST00000553683 BCDIN3DQ7Z5W3 292 aaKnown RBP3.97□□□□□ -1.77
VRK1-202ENST00000553683 KCTD20Q7Z5Y7 419 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 ZNF398Q8TD17 642 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 BRI3BPQ8WY22 251 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 HIST1H2AAQ96QV6 131 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 CIPCQ9C0C6 399 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 HEYLQ9NQ87 328 aaPredicted RBP3.97□□□□□ -1.77
VRK1-202ENST00000553683 STARD7Q9NQZ5 370 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 MYO1AQ9UBC5 1043 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 MGAT4CQ9UBM8 478 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 MAFFQ9ULX9 164 aa3.97□□□□□ -1.77
VRK1-202ENST00000553683 ZNF804BA4D1E1 1349 aa3.96□□□□□ -1.77
VRK1-202ENST00000553683 A0A1W2PPC4 97 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 TCRBV5S1A1TA0A578 114 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 AP4M1O00189 453 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 EXOC5O00471 708 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 CES2O00748 559 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 SPRY2O43597 315 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 MYL4P12829 197 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 SLC5A1P13866 664 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 IDEP14735 1019 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 RBL1P28749 1068 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 GNALP38405 381 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 PIK3CBP42338 1070 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 RENBPP51606 427 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 CFHR3Q02985 330 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 EZH2Q15910 746 aaKnown RBP3.96□□□□□ -1.78
VRK1-202ENST00000553683 COBLL1Q53SF7 1204 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 ZKSCAN2Q63HK3 967 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 NAPRTQ6XQN6 538 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 ZNF813Q6ZN06 617 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 NEK8Q86SG6 692 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 SKAP1Q86WV1 359 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 CHSY1Q86X52 802 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 GALNT16Q8N428 558 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 RNF152Q8N8N0 203 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 PNPLA1Q8N8W4 532 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 C8orf58Q8NAV2 365 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 VPS50Q96JG6 964 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 C1QTNF7Q9BXJ2 289 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 RIMKLBQ9ULI2 386 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 HPSEQ9Y251 543 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 TBC1D30Q9Y2I9 924 aa3.96□□□□□ -1.78
VRK1-202ENST00000553683 SPATA31A1Q5TZJ5 1347 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 COL3A1P02461 1466 aaPredicted RBP3.95□□□□□ -1.78
VRK1-202ENST00000553683 CYP2D7A0A087X1C5 515 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 PPP6CO00743 305 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 EXOC3O60645 756 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 VNN1O95497 513 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 HGFP14210 728 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 TSHRP16473 764 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 FGFR2P21802 821 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 ADRA1DP25100 572 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 TM4SF4P48230 202 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 DIO1P49895 249 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 DGKQP52824 942 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 PSG6Q00889 435 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 LMAN2Q12907 356 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 FAM187BQ17R55 369 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 MRNIPQ6NTE8 343 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 TLDC1Q6P9B6 456 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 ZNF782Q6ZMW2 699 aaPredicted RBP3.95□□□□□ -1.78
VRK1-202ENST00000553683 USP49Q70CQ1 688 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 C12orf76Q8N812 135 aaPredicted RBP3.95□□□□□ -1.78
VRK1-202ENST00000553683 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.95□□□□□ -1.78
VRK1-202ENST00000553683 WDYHV1Q96HA8 205 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 RITA1Q96K30 269 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 CCDC17Q96LX7 622 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 MAGEB5Q9BZ81 275 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 TMOD4Q9NZQ9 345 aa3.95□□□□□ -1.78
VRK1-202ENST00000553683 POM121BA6NF01 834 aa3.94□□□□□ -1.78
VRK1-202ENST00000553683 OR2W5A6NFC9 320 aa3.94□□□□□ -1.78
VRK1-202ENST00000553683 APEHP13798 732 aaKnown RBP3.94□□□□□ -1.78
VRK1-202ENST00000553683 EIF4A1P60842 406 aaKnown RBP3.94□□□□□ -1.78
VRK1-202ENST00000553683 STK3Q13188 491 aa3.94□□□□□ -1.78
VRK1-202ENST00000553683 LARS2Q15031 903 aaKnown RBP3.94□□□□□ -1.78
VRK1-202ENST00000553683 ACOX1Q15067 660 aa3.94□□□□□ -1.78
VRK1-202ENST00000553683 MORN5Q5VZ52 161 aa3.94□□□□□ -1.78
VRK1-202ENST00000553683 VSTM1Q6UX27 236 aa3.94□□□□□ -1.78
VRK1-202ENST00000553683 SERPINA13PQ6UXR4 307 aa3.94□□□□□ -1.78
VRK1-202ENST00000553683 C1QL2Q7Z5L3 287 aa3.94□□□□□ -1.78
VRK1-202ENST00000553683 PNLDC1Q8NA58 520 aaKnown RBP3.94□□□□□ -1.78
VRK1-202ENST00000553683 CCDC150Q8NCX0 1101 aa3.94□□□□□ -1.78
VRK1-202ENST00000553683 ABHD5Q8WTS1 349 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms