RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 FAM92AA1XBS5 289 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 GOLGA6L4A6NEF3 574 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 K7EQS6 105 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 STX10O60499 249 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 TLR5O60602 858 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 KAT7O95251 611 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 PRR29P0C7W0 189 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 GBP1P32455 592 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 GRIA2P42262 883 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 ASPAP45381 313 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 ANO4Q32M45 955 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 PLK5Q496M5 336 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 RHBDF2Q6PJF5 856 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 TTC39CQ8N584 583 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 CCDC33Q8N5R6 958 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 C12orf29Q8N999 325 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 CYFIP2Q96F07 1278 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 HNRNPABQ99729 332 aaKnown RBP13.48□□□□□ -0.25
LINC00643-202ENST00000553426 SMOQ99835 787 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 NIF3L1Q9GZT8 377 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 MMRN2Q9H8L6 949 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 TMEM8AQ9HCN3 771 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 CSNK1G1Q9HCP0 422 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.48□□□□□ -0.25
LINC00643-202ENST00000553426 POLR3BQ9NW08 1133 aaPredicted RBP13.48□□□□□ -0.25
LINC00643-202ENST00000553426 RMND1Q9NWS8 449 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 LSM7Q9UK45 103 aaKnown RBP13.48□□□□□ -0.25
LINC00643-202ENST00000553426 MMP17Q9ULZ9 603 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 EPG5Q9HCE0 2579 aa13.48□□□□□ -0.25
LINC00643-202ENST00000553426 RALGAPA1Q6GYQ0 2036 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 CETN3O15182 167 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 ZDHHC11BP0C7U3 371 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 TRIM49P0CI25 452 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 TRIM49CP0CI26 452 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 EPB41P11171 864 aaKnown RBP13.47□□□□□ -0.25
LINC00643-202ENST00000553426 CD58P19256 250 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 GTF2H1P32780 548 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 ATP5C1P36542 298 aaKnown RBP13.47□□□□□ -0.25
LINC00643-202ENST00000553426 MPLP40238 635 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 TNFRSF4P43489 277 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 SLC6A11P48066 632 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 INCA1Q0VD86 236 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 CRY1Q16526 586 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 EDRF1Q3B7T1 1238 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 EOGTQ5NDL2 527 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 LY6G5CQ5SRR4 150 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 KRT39Q6A163 491 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 ANO7Q6IWH7 933 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 TADA2BQ86TJ2 420 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 TTC30AQ86WT1 665 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 TAS1R2Q8TE23 839 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 JAKMIP2Q96AA8 810 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 CHAMP1Q96JM3 812 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 DUSP9Q99956 384 aaKnown RBP13.47□□□□□ -0.25
LINC00643-202ENST00000553426 POLMQ9NP87 494 aaPredicted RBP13.47□□□□□ -0.25
LINC00643-202ENST00000553426 VPS45Q9NRW7 570 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 DEC1Q9P2X7 70 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 HMGXB4Q9UGU5 601 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 PCDHA5Q9Y5H7 936 aa13.47□□□□□ -0.25
LINC00643-202ENST00000553426 A0A0A0MRY4 1105 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 TBC1D3BA6NDS4 549 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 ZBTB24O43167 697 aaPredicted RBP13.46□□□□□ -0.25
LINC00643-202ENST00000553426 BEST1O76090 585 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 IRF1P10914 325 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 ACO1P21399 889 aaKnown RBP13.46□□□□□ -0.25
LINC00643-202ENST00000553426 TIE1P35590 1138 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 PSEN1P49768 467 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 LIMK1P53667 647 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 SLC8A3P57103 927 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 CREB5Q02930 508 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 KDSRQ06136 332 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 PPP3CAQ08209 521 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 BECN1Q14457 450 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 GAB4Q2WGN9 574 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 C1orf220Q5T0J3 134 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 CLEC20AQ6ZU45 233 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 TRMT11Q7Z4G4 463 aaKnown RBP13.46□□□□□ -0.25
LINC00643-202ENST00000553426 ALLCQ8N6M5 410 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 TXNDC5Q8NBS9 432 aaKnown RBP13.46□□□□□ -0.25
LINC00643-202ENST00000553426 ZMIZ2Q8NF64 920 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 KCNV2Q8TDN2 545 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 FAXDC2Q96IV6 333 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 ZFRQ96KR1 1074 aaKnown RBP13.46□□□□□ -0.25
LINC00643-202ENST00000553426 SPACA7Q96KW9 195 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 CNOT6LQ96LI5 555 aaKnown RBP13.46□□□□□ -0.25
LINC00643-202ENST00000553426 TSG101Q99816 390 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 DUSP15Q9H1R2 295 aaPredicted RBP13.46□□□□□ -0.25
LINC00643-202ENST00000553426 PNPLA8Q9NP80 782 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 SPHK2Q9NRA0 654 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 BCCIPQ9P287 314 aaKnown RBP eCLIP13.46□□□□□ -0.25
LINC00643-202ENST00000553426 HOOK1Q9UJC3 728 aaKnown RBP13.46□□□□□ -0.25
LINC00643-202ENST00000553426 SCML2Q9UQR0 700 aa13.46□□□□□ -0.25
LINC00643-202ENST00000553426 CFAP47Q6ZTR5 3102 aa13.46□□□□□ -0.26
LINC00643-202ENST00000553426 SDK1Q7Z5N4 2213 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 DCLK1O15075 740 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 GDF9O60383 454 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 CILPO75339 1184 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 SMC2O95347 1197 aa13.45□□□□□ -0.26
LINC00643-202ENST00000553426 KLF8O95600 359 aaPredicted RBP13.45□□□□□ -0.26
LINC00643-202ENST00000553426 MXI1P50539 228 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms