RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 A0A1B0GTW7 788 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 E2F8A0AVK6 867 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 COCHO43405 550 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 SCP2P22307 547 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 ANXA13P27216 316 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 ABCG1P45844 678 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 NOP14P78316 857 aaKnown RBP13.76□□□□□ -0.21
VPS29-211ENST00000553128 HLA-BQ31612 363 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 WDR45BQ5MNZ6 344 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 BTBD8Q5XKL5 378 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 KIAA1324Q6UXG2 1013 aaKnown RBP13.76□□□□□ -0.21
VPS29-211ENST00000553128 DBX2Q6ZNG2 339 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 BRSK2Q8IWQ3 736 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 KCTD17Q8N5Z5 321 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 DNASE2BQ8WZ79 361 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 GABRG3Q99928 467 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 ZDHHC5Q9C0B5 715 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 MTMR12Q9C0I1 747 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 MIR1-1HGQ9H1L0 117 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 SPHK2Q9NRA0 654 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 ITGA11Q9UKX5 1188 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 CDH9Q9ULB4 789 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 RAI2Q9Y5P3 530 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 SLCO1B1Q9Y6L6 691 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 ZNF462Q96JM2 2506 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 SHROOM3Q8TF72 1996 aa13.76□□□□□ -0.21
VPS29-211ENST00000553128 PTPRJQ12913 1337 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 GOLGA8IPA6NC78 632 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 GOLGA8JA6NMD2 632 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 MEI4A8MW99 385 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 KCNJ18B7U540 433 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 ATXN7O15265 892 aaPredicted RBP13.75□□□□□ -0.21
VPS29-211ENST00000553128 KRT18P05783 430 aaKnown RBP13.75□□□□□ -0.21
VPS29-211ENST00000553128 IRF1P10914 325 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 NCAM1P13591 858 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 CD6P30203 668 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 MDH1BQ5I0G3 518 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 LARP1BQ659C4 914 aaKnown RBP13.75□□□□□ -0.21
VPS29-211ENST00000553128 DDX42Q86XP3 938 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS29-211ENST00000553128 ZNF843Q8N446 348 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 RHBDD1Q8TEB9 315 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 FOXJ1Q92949 421 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 TOE1Q96GM8 510 aaKnown RBP13.75□□□□□ -0.21
VPS29-211ENST00000553128 LLPHQ9BRT6 129 aaKnown RBP13.75□□□□□ -0.21
VPS29-211ENST00000553128 GPR174Q9BXC1 333 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 ST6GALNAC4Q9H4F1 302 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 PRORYQ9H606 182 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 CCSER2Q9H7U1 834 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 PDE11AQ9HCR9 933 aa13.75□□□□□ -0.21
VPS29-211ENST00000553128 DNAJC17Q9NVM6 304 aaKnown RBP13.75□□□□□ -0.21
VPS29-211ENST00000553128 WSB2Q9NYS7 404 aaPredicted RBP13.75□□□□□ -0.21
VPS29-211ENST00000553128 RBAKQ9NYW8 714 aaPredicted RBP13.75□□□□□ -0.21
VPS29-211ENST00000553128 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS29-211ENST00000553128 MGAQ8IWI9 3026 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 GOLGA4Q13439 2230 aaKnown RBP13.74□□□□□ -0.21
VPS29-211ENST00000553128 TK2O00142 265 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 TRIM66O15016 1216 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 TBCAO75347 108 aaKnown RBP13.74□□□□□ -0.21
VPS29-211ENST00000553128 PPP1R37O75864 691 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 ZNF883P0CG24 379 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 MATKP42679 507 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 PPP3CCP48454 512 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 PGFP49763 221 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 CLDN6P56747 220 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 RBP5P82980 135 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 MYO1EQ12965 1108 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 CCDC157Q569K6 752 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 DCAF12L1Q5VU92 463 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 TDRD10Q5VZ19 366 aaKnown RBP13.74□□□□□ -0.21
VPS29-211ENST00000553128 GRAMD4Q6IC98 578 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 ZNF720Q7Z2F6 126 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 SFR1Q86XK3 245 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 FAM184AQ8NB25 1140 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 MYCBPAPQ8TBZ2 947 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 RAD54LQ92698 747 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 OTUB2Q96DC9 234 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 P2RY11Q96G91 374 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 C8orf48Q96LL4 319 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 CEP295NLQ96MC4 621 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 MRPL45Q9BRJ2 306 aaKnown RBP13.74□□□□□ -0.21
VPS29-211ENST00000553128 STRA6Q9BX79 667 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 ZNF518BQ9C0D4 1074 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 DPEP3Q9H4B8 488 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 CHORDC1Q9UHD1 332 aaPredicted RBP13.74□□□□□ -0.21
VPS29-211ENST00000553128 SH3BP1Q9Y3L3 701 aa13.74□□□□□ -0.21
VPS29-211ENST00000553128 A0A1B0GVT2 93 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 PLK4O00444 970 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 CLDN5O00501 218 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 ZBTB24O43167 697 aaPredicted RBP13.73□□□□□ -0.21
VPS29-211ENST00000553128 TLX3O43711 291 aaPredicted RBP13.73□□□□□ -0.21
VPS29-211ENST00000553128 GREM1O60565 184 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 CER1O95813 267 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 GRIN1Q05586 938 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 SMAD1Q15797 465 aaKnown RBP13.73□□□□□ -0.21
VPS29-211ENST00000553128 SDE2Q6IQ49 451 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 DHRS13Q6UX07 377 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 HS2ST1Q7LGA3 356 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 ZNF605Q86T29 641 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 GALNT15Q8N3T1 639 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 PDCD7Q8N8D1 485 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms