RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TCEAL5Q5H9L2 206 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 DUPD1Q68J44 220 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 SLC39A4Q6P5W5 647 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PHC3Q8NDX5 983 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 INPP5DQ92835 1189 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ZNF558Q96NG5 402 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 TMEM237Q96Q45 408 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PAAF1Q9BRP4 392 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ADPGKQ9BRR6 497 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 TCHPQ9BT92 498 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 LSM14BQ9BX40 385 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 STRA6Q9BX79 667 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 MRPL9Q9BYD2 267 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 AAASQ9NRG9 546 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 AIPL1Q9NZN9 384 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PDP2Q9P2J9 529 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ANKFY1Q9P2R3 1169 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 TBX20Q9UMR3 447 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 TRAF3IP3Q9Y228 551 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 GIT1Q9Y2X7 761 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 DAAM1Q9Y4D1 1078 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 TMEM120BA0PK00 339 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 MAGEA13PA6NCF6 341 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 FAM187AA6NFU0 413 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 CETN3O15182 167 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 INPPL1O15357 1258 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 NOL4O94818 638 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 GM2AP17900 193 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 NR2F2P24468 414 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 IGFBP6P24592 240 aaPredicted RBP8.02□□□□□ -1.13
LIMA1-216ENST00000552909 RPL13P26373 211 aaKnown RBP8.02□□□□□ -1.13
LIMA1-216ENST00000552909 VHLP40337 213 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 SERPINB4P48594 390 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 GTF2BQ00403 316 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 STRN3Q13033 797 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 SKIV2LQ15477 1246 aaKnown RBP8.02□□□□□ -1.13
LIMA1-216ENST00000552909 EDRF1Q3B7T1 1238 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 GLRA4Q5JXX5 417 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 FOXR2Q6PJQ5 311 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 ADGRD2Q7Z7M1 963 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 VSIG1Q86XK7 387 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 COLGALT2Q8IYK4 626 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 SYCE1Q8N0S2 351 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 SLC39A11Q8N1S5 342 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 TMEM130Q8N3G9 435 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 CFAP61Q8NHU2 1237 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 TPCN2Q8NHX9 752 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 URGCPQ8TCY9 931 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 CKAP2Q8WWK9 683 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 PTPRN2Q92932 1015 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 GRAMD1AQ96CP6 724 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 CEP63Q96MT8 703 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 ACCSQ96QU6 501 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 VN1R3Q9BXE9 311 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 DCLRE1BQ9H816 532 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 UBN1Q9NPG3 1134 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 NMRK1Q9NWW6 199 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 RASAL2Q9UJF2 1139 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 TMCO1Q9UM00 188 aa8.02□□□□□ -1.13
LIMA1-216ENST00000552909 RPL26L1Q9UNX3 145 aaKnown RBP8.02□□□□□ -1.13
LIMA1-216ENST00000552909 PRG3Q9Y2Y8 225 aaPredicted RBP8.02□□□□□ -1.13
LIMA1-216ENST00000552909 ANKRD63C9JTQ0 380 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 SMAPO00193 183 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 NRP1O14786 923 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 PER2O15055 1255 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 CLDN3O15551 220 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 TOM1L1O75674 476 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 FGGP02679 453 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 NR3C1P04150 777 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ABCD1P33897 745 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 PLCB3Q01970 1234 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 DSC1Q08554 894 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 MGAT5Q09328 741 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 SFSWAPQ12872 951 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 CCDC6Q16204 474 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 DCAF4L1Q3SXM0 396 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ZBTB41Q5SVQ8 909 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 MPZL3Q6UWV2 235 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ZPBP2Q6X784 338 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 HS2ST1Q7LGA3 356 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 RBM23Q86U06 439 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 EXOC3L1Q86VI1 746 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 MYLK4Q86YV6 388 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 UHMK1Q8TAS1 419 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 LRRC8CQ8TDW0 803 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 KCNN1Q92952 543 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 IGSF21Q96ID5 467 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ZMAT2Q96NC0 199 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 SEMA4AQ9H3S1 761 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 TMEM206Q9H813 350 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 SPG21Q9NZD8 308 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 KANSL3Q9P2N6 904 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 MTRF1LQ9UGC7 380 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 TTC7AQ9ULT0 858 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 CITO14578 2027 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 HIDE1A8MVS5 230 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 HNRNPDLO14979 420 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 TJP3O95049 919 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 GNA14O95837 355 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ALDH2P05091 517 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms