RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CEP120Q8N960 986 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 TMEM35BQ8NCS4 154 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 RDM1Q8NG50 284 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 ATG4CQ96DT6 458 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 ACAP3Q96P50 834 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF184Q99676 751 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 EBF4Q9BQW3 602 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 SLC9A2Q9UBY0 812 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 PPM1HQ9ULR3 514 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 PARP14Q460N5 1801 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 HMX2A2RU54 273 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ANKRD33BA6NCL7 494 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 PRR5-ARHGAP8B1AHC4 643 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 H0YCG3 227 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 H0YIN7 160 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 LGR5O75473 907 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 RFPL1O75677 317 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 SORBS2O94875 1100 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MAP3K6O95382 1288 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 LSM8O95777 96 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 IL1BP01584 269 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 PSAPP07602 524 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 INHBAP08476 426 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ZCCHC18P0CG32 403 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 KRT3P12035 628 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MIPP30301 263 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ARL2P36404 184 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 RAP1GAPP47736 663 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 YWHAGP61981 247 aaKnown RBP eCLIP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ARHGAP8P85298 464 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ROR2Q01974 943 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 UBAP2LQ14157 1087 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 TEX44Q53QW1 395 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 FAM91A1Q658Y4 838 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CCDC62Q6P9F0 684 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ATG14Q6ZNE5 492 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 RIPOR1Q6ZS17 1223 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CYP4V2Q6ZWL3 525 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 POLNQ7Z5Q5 900 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ZBTB33Q86T24 672 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 LAPTM4BQ86VI4 370 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 RFX6Q8HWS3 928 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 PPM1NQ8N819 430 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 HSPH1Q92598 858 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 GPRASP2Q96D09 838 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CFAP36Q96G28 342 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 TUBGCP5Q96RT8 1024 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CPXM1Q96SM3 734 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 FRMD8P1Q9BZ68 369 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 SLC13A1Q9BZW2 595 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 PORCNQ9H237 461 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 JPH1Q9HDC5 661 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 RNF146Q9NTX7 359 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 PPARGC1AQ9UBK2 798 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF212Q9UDV6 495 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 SLC7A8Q9UHI5 535 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 SCOCQ9UIL1 159 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 POLIQ9UNA4 740 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 EFR3BQ9Y2G0 817 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 IQANK1A0A1B0GTG1 560 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MEI4A8MW99 385 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 A8MXQ7 604 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 COPEO14579 308 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 KLF11O14901 512 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MAGEC1O60732 1142 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 DKC1O60832 514 aaKnown RBP eCLIP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ERBB2P04626 1255 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 GSTA2P09210 222 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ANPEPP15144 967 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CCND2P30279 289 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ASPAP45381 313 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CDH8P55286 799 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 POLE2P56282 527 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 YWHAZP63104 245 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MAP3K10Q02779 954 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 TAP1Q03518 808 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 RBBP5Q15291 538 aaKnown RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CHI3L2Q15782 390 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 AP1ARQ63HQ0 302 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 STYK1Q6J9G0 422 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 TRNP1Q6NT89 227 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 IZUMO2Q6UXV1 221 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ZCCHC23Q6ZST2 131 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MYLK4Q86YV6 388 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 TMPRSS6Q8IU80 811 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MFN1Q8IWA4 741 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 BRSK2Q8IWQ3 736 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CTAGE3PQ8IX95 158 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 ULK2Q8IYT8 1036 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 TTC13Q8NBP0 860 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 PPFIBP2Q8ND30 876 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CMASQ8NFW8 434 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-212ENST00000552491 DEPTORQ8TB45 409 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 SPATA18Q8TC71 538 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 STMN2Q93045 179 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 MMP19Q99542 508 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 THTPAQ9BU02 230 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 CCDC106Q9BWC9 280 aa5.64□□□□□ -1.51
LIMA1-212ENST00000552491 NIF3L1Q9GZT8 377 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms