RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ANKRD45Q5TZF3 282 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 GRAMD4Q6IC98 578 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 HIBCHQ6NVY1 386 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 BEND5Q7L4P6 421 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 GPR155Q7Z3F1 870 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 LYSMD2Q8IV50 215 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 CLASRPQ8N2M8 674 aaKnown RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 PDILTQ8N807 584 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 LINC00482Q8N8I6 264 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 TXNDC5Q8NBS9 432 aaKnown RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 CCDC150Q8NCX0 1101 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 CHST13Q8NET6 341 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 OR6B3Q8NGW1 331 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 IL31RAQ8NI17 732 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 NSUN6Q8TEA1 469 aaKnown RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 RUBCNQ92622 972 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 LPAR1Q92633 364 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 USP6NLQ92738 828 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 ATOH1Q92858 354 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 IQCDQ96DY2 449 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 TMEM209Q96SK2 561 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 EIF2AK1Q9BQI3 630 aaKnown RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 PORCNQ9H237 461 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 DLL4Q9NR61 685 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 TLR9Q9NR96 1032 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 LANCL2Q9NS86 450 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 AFF4Q9UHB7 1163 aaKnown RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 DNAI1Q9UI46 699 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 CNOT11Q9UKZ1 510 aaKnown RBP4.31□□□□□ -1.72
LIMA1-208ENST00000551691 PCDHA6Q9UN73 950 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 COG5Q9UP83 839 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 KNSTRNQ9Y448 316 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 PCDHB1Q9Y5F3 818 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 PCDHA1Q9Y5I3 950 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 MAST2Q6P0Q8 1798 aa4.31□□□□□ -1.72
LIMA1-208ENST00000551691 ECM29Q5VYK3 1845 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 FASNP49327 2511 aaKnown RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 MROH6A6NGR9 719 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 DCXO43602 365 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 HTATSF1O43719 755 aaKnown RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 TBC1D4O60343 1298 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 FGF18O76093 207 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 CLTBP09497 229 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 LTA4HP09960 611 aaKnown RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 FTH1P19P0C7X4 201 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 HARSP12081 509 aaKnown RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 TYRP14679 529 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 RPL13P26373 211 aaKnown RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 ADCY8P40145 1251 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 SUMO3P55854 103 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 ITGA1P56199 1179 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 CHRNDQ07001 517 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 PDE1CQ14123 709 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 FAM110CQ1W6H9 321 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 TUBB8Q3ZCM7 444 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 MFSD14BQ5SR56 506 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 APOBEC3HQ6NTF7 200 aaKnown RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF783Q6ZMS7 281 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 PQLC1Q8N2U9 271 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 NME8Q8N427 588 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 ATG16L2Q8NAA4 619 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 FANCBQ8NB91 859 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 KYQ8NBH2 561 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 SLC44A5Q8NCS7 719 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 NAXEQ8NCW5 288 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 SH3RF3Q8TEJ3 882 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF480Q8WV37 535 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 TRAPPC12Q8WVT3 735 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 IPCEF1Q8WWN9 437 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 TNPO1Q92973 898 aaKnown RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 CYFIP2Q96F07 1278 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 WDR92Q96MX6 357 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 SAMD11Q96NU1 681 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 CLIC6Q96NY7 704 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 TACO1Q9BSH4 297 aaKnown RBP4.3□□□□□ -1.72
LIMA1-208ENST00000551691 AMNQ9BXJ7 453 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 SLAMF7Q9NQ25 335 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 DACT1Q9NYF0 836 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 CALCOCO1Q9P1Z2 691 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 RBPJLQ9UBG7 517 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 TSPYL4Q9UJ04 414 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 MAGEL2Q9UJ55 1249 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 PAXBP1Q9Y5B6 917 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 BRWD1Q9NSI6 2320 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 RLFQ13129 1914 aa4.3□□□□□ -1.72
LIMA1-208ENST00000551691 MYBBP1AQ9BQG0 1328 aaKnown RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 ACACBO00763 2458 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 PRRT4C9JH25 899 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 M0R3H8 397 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 MYO1CO00159 1063 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 SUV39H1O43463 412 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 GPR32O75388 356 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 MPIG6BO95866 241 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 TIMP1P01033 207 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 LRG1P02750 347 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 GNAI2P04899 355 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 PCCAP05165 728 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-208ENST00000551691 C6P13671 934 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 IDEP14735 1019 aa4.29□□□□□ -1.72
LIMA1-208ENST00000551691 TSHRP16473 764 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms