RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 SMOC1Q9H4F8 434 aa8.13□□□□□ -1.11
NEK3-201ENST00000550331 MAGEF1Q9HAY2 307 aa8.13□□□□□ -1.11
NEK3-201ENST00000550331 AGPAT3Q9NRZ7 376 aa8.13□□□□□ -1.11
NEK3-201ENST00000550331 TRPM5Q9NZQ8 1165 aa8.13□□□□□ -1.11
NEK3-201ENST00000550331 MYH11P35749 1972 aa8.13□□□□□ -1.11
NEK3-201ENST00000550331 ANK1P16157 1881 aa8.13□□□□□ -1.11
NEK3-201ENST00000550331 TMEM8BA6NDV4 472 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 ZNF840PA6NDX5 716 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 SPTLC2O15270 562 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 TGFB1I1O43294 461 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 YEATS4O95619 227 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 STAU1O95793 577 aaKnown RBP8.12□□□□□ -1.11
NEK3-201ENST00000550331 OLFM2O95897 454 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 TNNI1P19237 187 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 SPINK2P20155 84 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 ATICP31939 592 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 MPLP40238 635 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 NOVA1P51513 510 aaKnown RBP8.12□□□□□ -1.11
NEK3-201ENST00000550331 ASIC1P78348 528 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 SLC7A9P82251 487 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 CYP24A1Q07973 514 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 EHHADHQ08426 723 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 ZNF252P-AS1Q0IIN9 211 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 DMC1Q14565 340 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 PSMD6Q15008 389 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 ELF2Q15723 593 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.12□□□□□ -1.11
NEK3-201ENST00000550331 PLK5Q496M5 336 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 FAM26FQ5R3K3 315 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 NAIF1Q69YI7 327 aaPredicted RBP8.12□□□□□ -1.11
NEK3-201ENST00000550331 HS2ST1Q7LGA3 356 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 C11orf74Q86VG3 221 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 C12orf56Q8IXR9 622 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 IQUBQ8NA54 791 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 TTC16Q8NEE8 873 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 HPS3Q969F9 1004 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 MMS19Q96T76 1030 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 CGRRF1Q99675 332 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 C7orf25Q9BPX7 421 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 SNX25Q9H3E2 840 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 VPS45Q9NRW7 570 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 CGNQ9P2M7 1197 aaKnown RBP8.12□□□□□ -1.11
NEK3-201ENST00000550331 AKAP13Q12802 2813 aa8.12□□□□□ -1.11
NEK3-201ENST00000550331 DSPP15924 2871 aaKnown RBP8.12□□□□□ -1.11
NEK3-201ENST00000550331 SRRM3A6NNA2 597 aaPredicted RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 F8VP50 259 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 LEFTY2O00292 366 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 SLC9A3R1O14745 358 aaPredicted RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 GIPC1O14908 333 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 CUTAO60888 179 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 RHOBTB1O94844 696 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 ZIC2O95409 532 aaPredicted RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 OAS1P00973 400 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 PDGFRBP09619 1106 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 DLATP10515 647 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 PDIA4P13667 645 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 GNL1P36915 607 aaPredicted RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 OPRD1P41143 372 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 EIF2DP41214 584 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 USP46P62068 366 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 TNNC1P63316 161 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 MRPS21P82921 87 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 ZXDBP98169 803 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 PSMD2Q13200 908 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 BMT2Q1RMZ1 405 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 GAB4Q2WGN9 574 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 WDR72Q3MJ13 1102 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 HSF5Q4G112 596 aaPredicted RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 MDH1BQ5I0G3 518 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 TDRD10Q5VZ19 366 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 TCEAL6Q6IPX3 200 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 SHC4Q6S5L8 630 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 LRSAM1Q6UWE0 723 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 UNC13DQ70J99 1090 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 RASSF3Q86WH2 238 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 LINC00528Q8N1L1 170 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 XXYLT1Q8NBI6 393 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 B3GALNT2Q8NCR0 500 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 TSTD1Q8NFU3 115 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 USP33Q8TEY7 942 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 SCFD1Q8WVM8 642 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 ZCCHC14Q8WYQ9 949 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 OVCA2Q8WZ82 227 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 TCEAL3Q969E4 200 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 SYAP1Q96A49 352 aaPredicted RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 CCDC127Q96BQ5 260 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 DHX58Q96C10 678 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 CNOT6LQ96LI5 555 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 ZNF396Q96N95 335 aaPredicted RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 SLITRK1Q96PX8 696 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 MRPL45Q9BRJ2 306 aaKnown RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 EDEM2Q9BV94 578 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 XYLT2Q9H1B5 865 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 DUSP15Q9H1R2 295 aaPredicted RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 LINC00597Q9H2U6 94 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 VRTNQ9H8Y1 702 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 POLR3BQ9NW08 1133 aaPredicted RBP8.11□□□□□ -1.11
NEK3-201ENST00000550331 NME7Q9Y5B8 376 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 CPQQ9Y646 472 aa8.11□□□□□ -1.11
NEK3-201ENST00000550331 ZNF638Q14966 1978 aaKnown RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms